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Items: 1 to 20 of 114

1.

A bioinformatics analysis of alternative exon usage in human genes coding for extracellular matrix proteins.

Sakabe NJ, Vibranovski MD, de Souza SJ.

Genet Mol Res. 2004 Dec 30;3(4):532-44.

2.

Alternate exon usage is a commonly used mechanism for increasing coding diversity within genes coding for extracellular matrix proteins.

Boyd CD, Pierce RA, Schwarzbauer JE, Doege K, Sandell LJ.

Matrix. 1993 Nov;13(6):457-69. Review.

PMID:
8309425
4.

Extracellular matrix gene alternative splicing by trabecular meshwork cells in response to mechanical stretching.

Keller KE, Kelley MJ, Acott TS.

Invest Ophthalmol Vis Sci. 2007 Mar;48(3):1164-72.

PMID:
17325160
5.

Bioinformatics analysis of alternative splicing.

Lee C, Wang Q.

Brief Bioinform. 2005 Mar;6(1):23-33. Review.

PMID:
15826354
6.

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs.

Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, Jin L, Motono C, Hata H, Isogai T, Nagai K, Otsuki T, Kuryshev V, Shionyu M, Yura K, Go M, Thierry-Mieg J, Thierry-Mieg D, Wiemann S, Nomura N, Sugano S, Gojobori T, Imanishi T.

Nucleic Acids Res. 2006;34(14):3917-28. Epub 2006 Aug 12.

7.
8.

Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons.

Cusack BP, Wolfe KH.

Mol Biol Evol. 2005 Nov;22(11):2198-208. Epub 2005 Jul 27.

PMID:
16049198
9.

Genomic evidence for non-random endemic populations of decaying exons from mammalian genes.

Morais DD, Harrison PM.

BMC Genomics. 2009 Jul 13;10:309. doi: 10.1186/1471-2164-10-309.

10.

Origin of alternative splicing by tandem exon duplication.

Kondrashov FA, Koonin EV.

Hum Mol Genet. 2001 Nov 1;10(23):2661-9.

PMID:
11726553
11.

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.

BMC Genomics. 2006 Dec 27;7:325.

13.

Integrative visual analysis of the effects of alternative splicing on protein domain interaction networks.

Emig D, Cline MS, Klein K, Kunert A, Mutzel P, Lengauer T, Albrecht M.

J Integr Bioinform. 2008 Aug 25;5(2). doi: 10.2390/biecoll-jib-2008-101.

PMID:
20134061
14.

Computational searches for splicing signals.

Zhang XH, Leslie CS, Chasin LA.

Methods. 2005 Dec;37(4):292-305.

PMID:
16314258
15.

Alternative splicing: a bioinformatics perspective.

Ferreira EN, Galante PA, Carraro DM, de Souza SJ.

Mol Biosyst. 2007 Jul;3(7):473-7. Epub 2007 May 18. Review.

PMID:
17579772
16.

Characterization of RUSC1 and RUSC2 genes in silico.

Katoh M, Katoh M.

Oncol Rep. 2004 Oct;12(4):933-8.

PMID:
15375525
17.

A small-scale systematic analysis of alternative splicing in Plasmodium falciparum.

Iriko H, Jin L, Kaneko O, Takeo S, Han ET, Tachibana M, Otsuki H, Torii M, Tsuboi T.

Parasitol Int. 2009 Jun;58(2):196-9. doi: 10.1016/j.parint.2009.02.002. Epub 2009 Mar 5.

PMID:
19268714
18.

A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.

Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S.

Genome Inform. 2006;17(1):88-99.

PMID:
17503359
19.

Efficient prediction of alternative splice forms using protein domain homology.

Hiller M, Backofen R, Heymann S, Busch A, Glaesser TM, Freytag JC.

In Silico Biol. 2004;4(2):195-208.

PMID:
15107023
20.

Assessing the impact of alternative splicing on domain interactions in the human proteome.

Resch A, Xing Y, Modrek B, Gorlick M, Riley R, Lee C.

J Proteome Res. 2004 Jan-Feb;3(1):76-83.

PMID:
14998166

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