Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 108

1.

Functional annotation and network reconstruction through cross-platform integration of microarray data.

Zhou XJ, Kao MC, Huang H, Wong A, Nunez-Iglesias J, Primig M, Aparicio OM, Finch CE, Morgan TE, Wong WH.

Nat Biotechnol. 2005 Feb;23(2):238-43. Epub 2005 Jan 16.

PMID:
15654329
2.

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

Chen HC, Lee HC, Lin TY, Li WH, Chen BS.

Bioinformatics. 2004 Aug 12;20(12):1914-27. Epub 2004 Mar 25.

PMID:
15044243
3.

Pathways to the analysis of microarray data.

Curtis RK, Oresic M, Vidal-Puig A.

Trends Biotechnol. 2005 Aug;23(8):429-35. Review.

PMID:
15950303
4.

Molecular networks in microarray analysis.

Sivachenko AY, Yuryev A, Daraselia N, Mazo I.

J Bioinform Comput Biol. 2007 Apr;5(2B):429-56. Review.

PMID:
17636854
5.

A Gibbs sampler for the identification of gene expression and network connectivity consistency.

Brynildsen MP, Tran LM, Liao JC.

Bioinformatics. 2006 Dec 15;22(24):3040-6. Epub 2006 Oct 23.

PMID:
17060361
6.

eXPatGen: generating dynamic expression patterns for the systematic evaluation of analytical methods.

Michaud DJ, Marsh AG, Dhurjati PS.

Bioinformatics. 2003 Jun 12;19(9):1140-6.

PMID:
12801875
7.

Theoretical and computational studies of the glucose signaling pathways in yeast using global gene expression data.

Lin X, Floudas CA, Wang Y, Broach JR.

Biotechnol Bioeng. 2003 Dec 30;84(7):864-86.

PMID:
14708127
8.

A meta-data based method for DNA microarray imputation.

Jörnsten R, Ouyang M, Wang HY.

BMC Bioinformatics. 2007 Mar 29;8:109.

9.

Challenges and prospects in the analysis of large-scale gene expression data.

Ihmels JH, Bergmann S.

Brief Bioinform. 2004 Dec;5(4):313-27.

PMID:
15606968
10.

Bayesian sparse hidden components analysis for transcription regulation networks.

Sabatti C, James GM.

Bioinformatics. 2006 Mar 15;22(6):739-46. Epub 2005 Dec 20.

PMID:
16368767
11.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

12.

Using a state-space model with hidden variables to infer transcription factor activities.

Li Z, Shaw SM, Yedwabnick MJ, Chan C.

Bioinformatics. 2006 Mar 15;22(6):747-54. Epub 2006 Jan 10.

PMID:
16403793
13.

Clustering biological annotations and gene expression data to identify putatively co-regulated biological processes.

Henegar C, Cancello R, Rome S, Vidal H, Clément K, Zucker JD.

J Bioinform Comput Biol. 2006 Aug;4(4):833-52.

PMID:
17007070
14.

Fast network component analysis (FastNCA) for gene regulatory network reconstruction from microarray data.

Chang C, Ding Z, Hung YS, Fung PC.

Bioinformatics. 2008 Jun 1;24(11):1349-58. doi: 10.1093/bioinformatics/btn131. Epub 2008 Apr 9.

PMID:
18400771
15.

Increasing feasibility of optimal gene network estimation.

Hansen A, Ott S, Koentges G.

Genome Inform. 2004;15(2):141-50.

PMID:
15706500
16.

Precedence Temporal Networks to represent temporal relationships in gene expression data.

Sacchi L, Larizza C, Magni P, Bellazzi R.

J Biomed Inform. 2007 Dec;40(6):761-74. Epub 2007 Jun 10.

17.

Detecting functional modules in the yeast protein-protein interaction network.

Chen J, Yuan B.

Bioinformatics. 2006 Sep 15;22(18):2283-90. Epub 2006 Jul 12.

PMID:
16837529
18.

Identification of gene expression patterns using planned linear contrasts.

Li H, Wood CL, Liu Y, Getchell TV, Getchell ML, Stromberg AJ.

BMC Bioinformatics. 2006 May 5;7:245.

19.

Gene network inference from incomplete expression data: transcriptional control of hematopoietic commitment.

Missal K, Cross MA, Drasdo D.

Bioinformatics. 2006 Mar 15;22(6):731-8. Epub 2005 Dec 6.

PMID:
16332705
20.

Synthetic microarray data generation with RANGE and NEMO.

Long J, Roth M.

Bioinformatics. 2008 Jan 1;24(1):132-4. Epub 2007 Nov 3.

PMID:
17982169

Supplemental Content

Support Center