Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 67

1.

ESTAP--an automated system for the analysis of EST data.

Mao C, Cushman JC, May GD, Weller JW.

Bioinformatics. 2003 Sep 1;19(13):1720-2.

PMID:
15593407
2.

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.

3.

EST processing: from trace to sequence.

Schmid R, Blaxter M.

Methods Mol Biol. 2009;533:189-220. doi: 10.1007/978-1-60327-136-3_9.

PMID:
19277557
4.

ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database.

Kossenkov A, Manion FJ, Korotkov E, Moloshok TD, Ochs MF.

Bioinformatics. 2003 Mar 22;19(5):675-6.

PMID:
12651736
5.

ESTuber db: an online database for Tuber borchii EST sequences.

Lazzari B, Caprera A, Cosentino C, Stella A, Milanesi L, Viotti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S13.

6.

Version VI of the ESTree db: an improved tool for peach transcriptome analysis.

Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S9. doi: 10.1186/1471-2105-9-S2-S9.

7.

Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system.

Diener SE, Houfek TD, Kalat SE, Windham DE, Burke M, Opperman C, Dean RA.

BMC Bioinformatics. 2005 Jun 15;6:147.

8.

ESTPiper--a web-based analysis pipeline for expressed sequence tags.

Tang Z, Choi JH, Hemmerich C, Sarangi A, Colbourne JK, Dong Q.

BMC Genomics. 2009 Apr 21;10:174. doi: 10.1186/1471-2164-10-174.

9.

CleanEST: a database of cleansed EST libraries.

Lee B, Shin G.

Nucleic Acids Res. 2009 Jan;37(Database issue):D686-9. doi: 10.1093/nar/gkn648. Epub 2008 Oct 2.

10.

EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration.

Forment J, Gilabert F, Robles A, Conejero V, Nuez F, Blanca JM.

BMC Bioinformatics. 2008 Jan 7;9:5. doi: 10.1186/1471-2105-9-5.

11.

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.

12.

PESTAS: a web server for EST analysis and sequence mining.

Nam SH, Kim DW, Jung TS, Choi YS, Kim DW, Choi HS, Choi SH, Park HS.

Bioinformatics. 2009 Jul 15;25(14):1846-8. doi: 10.1093/bioinformatics/btp293. Epub 2009 May 4.

PMID:
19414531
13.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

14.

GeMprospector--online design of cross-species genetic marker candidates in legumes and grasses.

Fredslund J, Madsen LH, Hougaard BK, Sandal N, Stougaard J, Bertioli D, Schauser L.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W670-5.

15.

ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs).

Liang C, Wang G, Liu L, Ji G, Fang L, Liu Y, Carter K, Webb JS, Dean JF.

BMC Genomics. 2007 May 29;8:134.

16.

WildSilkbase: an EST database of wild silkmoths.

Arunkumar KP, Tomar A, Daimon T, Shimada T, Nagaraju J.

BMC Genomics. 2008 Jul 17;9:338. doi: 10.1186/1471-2164-9-338.

17.

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D71-4.

18.

ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.

Nagaraj SH, Deshpande N, Gasser RB, Ranganathan S.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W143-7. Epub 2007 Jun 1.

19.

EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.

Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W459-62.

20.

GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61. doi: 10.1186/1471-2229-9-61.

Supplemental Content

Support Center