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Items: 1 to 20 of 116

1.

ESTminer: a suite of programs for gene and allele identification.

Nelson RT, Grant D, Shoemaker RC.

Bioinformatics. 2005 Mar 1;21(5):691-3. Epub 2004 Nov 5.

PMID:
15531616
2.

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.

PMID:
14764557
3.

ESTuber db: an online database for Tuber borchii EST sequences.

Lazzari B, Caprera A, Cosentino C, Stella A, Milanesi L, Viotti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S13.

4.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

5.

HaploSNPer: a web-based allele and SNP detection tool.

Tang J, Leunissen JA, Voorrips RE, van der Linden CG, Vosman B.

BMC Genet. 2008 Feb 28;9:23. doi: 10.1186/1471-2156-9-23.

6.

Pooled library tissue tags for EST-based gene discovery.

Gavin AJ, Scheetz TE, Roberts CA, O'Leary B, Braun TA, Sheffield VC, Soares MB, Robinson JP, Casavant TL.

Bioinformatics. 2002 Sep;18(9):1162-6.

PMID:
12217907
7.

Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index.

Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R, Burnside J, Aggrey SE, Simon J, Cogburn LA.

Physiol Genomics. 2006 May 16;25(3):514-24. Epub 2006 Mar 22.

8.

RBR: library-less repeat detection for ESTs.

Malde K, Schneeberger K, Coward E, Jonassen I.

Bioinformatics. 2006 Sep 15;22(18):2232-6. Epub 2006 Jul 12.

PMID:
16837527
9.

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.

Bioinformatics. 2007 Jul 1;23(13):i387-91.

PMID:
17646321
10.

The TIGR gene indices: reconstruction and representation of expressed gene sequences.

Quackenbush J, Liang F, Holt I, Pertea G, Upton J.

Nucleic Acids Res. 2000 Jan 1;28(1):141-5.

11.

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.

Karchin R, Diekhans M, Kelly L, Thomas DJ, Pieper U, Eswar N, Haussler D, Sali A.

Bioinformatics. 2005 Jun 15;21(12):2814-20. Epub 2005 Apr 12.

PMID:
15827081
12.

ESTminer: a Web interface for mining EST contig and cluster databases.

Huang Y, Pumphrey J, Gingle AR.

Bioinformatics. 2005 Mar 1;21(5):669-70. Epub 2004 Sep 16.

PMID:
15374864
13.

MSQT for choosing SNP assays from multiple DNA alignments.

Warthmann N, Fitz J, Weigel D.

Bioinformatics. 2007 Oct 15;23(20):2784-7. Epub 2007 Sep 4.

PMID:
17785349
14.

Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys.

Susko E, Roger AJ.

Bioinformatics. 2004 Sep 22;20(14):2279-87. Epub 2004 Apr 1.

PMID:
15059814
15.

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences.

Dantec LL, Chagné D, Pot D, Cantin O, Garnier-Géré P, Bedon F, Frigerio JM, Chaumeil P, Léger P, Garcia V, Laigret F, De Daruvar A, Plomion C.

Plant Mol Biol. 2004 Feb;54(3):461-70.

PMID:
15284499
16.

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D71-4.

17.

GoSh: a web-based database for goat and sheep EST sequences.

Caprera A, Lazzari B, Stella A, Merelli I, Caetano AR, Mariani P.

Bioinformatics. 2007 Apr 15;23(8):1043-5. Epub 2007 Mar 24.

PMID:
17384426
18.

WildSilkbase: an EST database of wild silkmoths.

Arunkumar KP, Tomar A, Daimon T, Shimada T, Nagaraju J.

BMC Genomics. 2008 Jul 17;9:338. doi: 10.1186/1471-2164-9-338.

19.

A graph based algorithm for generating EST consensus sequences.

Malde K, Coward E, Jonassen I.

Bioinformatics. 2005 Apr 15;21(8):1371-5. Epub 2004 Nov 30. Erratum in: Bioinformatics. 2005 Jul 1;21(13):3062.

PMID:
15572463
20.

PLATCOM: a Platform for Computational Comparative Genomics.

Choi K, Ma Y, Choi JH, Kim S.

Bioinformatics. 2005 May 15;21(10):2514-6. Epub 2005 Feb 24.

PMID:
15731206

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