Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 80

1.

Circular binary segmentation for the analysis of array-based DNA copy number data.

Olshen AB, Venkatraman ES, Lucito R, Wigler M.

Biostatistics. 2004 Oct;5(4):557-72.

PMID:
15475419
2.

A faster circular binary segmentation algorithm for the analysis of array CGH data.

Venkatraman ES, Olshen AB.

Bioinformatics. 2007 Mar 15;23(6):657-63. Epub 2007 Jan 18.

PMID:
17234643
3.

Integrated analysis of copy number alteration and RNA expression profiles of cancer using a high-resolution whole-genome oligonucleotide array.

Jung SH, Shin SH, Yim SH, Choi HS, Lee SH, Chung YJ.

Exp Mol Med. 2009 Jul 31;41(7):462-70. doi: 10.3858/emm.2009.41.7.051.

4.

Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.

Kloth JN, Oosting J, van Wezel T, Szuhai K, Knijnenburg J, Gorter A, Kenter GG, Fleuren GJ, Jordanova ES.

BMC Genomics. 2007 Feb 20;8:53.

5.

High-resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization.

Jönsson G, Staaf J, Olsson E, Heidenblad M, Vallon-Christersson J, Osoegawa K, de Jong P, Oredsson S, Ringnér M, Höglund M, Borg A.

Genes Chromosomes Cancer. 2007 Jun;46(6):543-58.

PMID:
17334996
6.

Identification of DNA copy number changes in microdissected serous ovarian cancer tissue using a cDNA microarray platform.

Tsuda H, Birrer MJ, Ito YM, Ohashi Y, Lin M, Lee C, Wong WH, Rao PH, Lau CC, Berkowitz RS, Wong KK, Mok SC.

Cancer Genet Cytogenet. 2004 Dec;155(2):97-107.

PMID:
15571795
7.

A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays.

Nannya Y, Sanada M, Nakazaki K, Hosoya N, Wang L, Hangaishi A, Kurokawa M, Chiba S, Bailey DK, Kennedy GC, Ogawa S.

Cancer Res. 2005 Jul 15;65(14):6071-9.

8.

A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data.

Lai Y, Zhao H.

Comput Biol Chem. 2005 Feb;29(1):47-54. Erratum in: Comput Biol Chem. 2005 Jun;29(3):258.

PMID:
15680585
9.

Targets of genome copy number reduction in primary breast cancers identified by integrative genomics.

Chen W, Salto-Tellez M, Palanisamy N, Ganesan K, Hou Q, Tan LK, Sii LH, Ito K, Tan B, Wu J, Tay A, Tan KC, Ang E, Tan BK, Tan PH, Ito Y, Tan P.

Genes Chromosomes Cancer. 2007 Mar;46(3):288-301.

PMID:
17171680
10.

Integrated analysis of expression and genome alteration reveals putative amplified target genes in esophageal cancer.

Sugimoto T, Arai M, Shimada H, Hata A, Seki N.

Oncol Rep. 2007 Aug;18(2):465-72.

PMID:
17611672
11.

Normalization of array-CGH data: influence of copy number imbalances.

Staaf J, Jönsson G, Ringnér M, Vallon-Christersson J.

BMC Genomics. 2007 Oct 22;8:382.

12.

Analysis of copy number variation in the normal human population within a region containing complex segmental duplications on 22q11 using high-resolution array-CGH.

de Bustos C, Díaz de Ståhl T, Piotrowski A, Mantripragada KK, Buckley PG, Darai E, Hansson CM, Grigelionis G, Menzel U, Dumanski JP.

Genomics. 2006 Aug;88(2):152-62. Epub 2006 May 18.

13.

Optimal design of oligonucleotide microarrays for measurement of DNA copy-number.

Sharp AJ, Itsara A, Cheng Z, Alkan C, Schwartz S, Eichler EE.

Hum Mol Genet. 2007 Nov 15;16(22):2770-9. Epub 2007 Aug 28.

PMID:
17725982
14.

Genome-wide characterization of gene expression variations and DNA copy number changes in prostate cancer cell lines.

Zhao H, Kim Y, Wang P, Lapointe J, Tibshirani R, Pollack JR, Brooks JD.

Prostate. 2005 May 1;63(2):187-97.

PMID:
15486987
15.

Visualization-based discovery and analysis of genomic aberrations in microarray data.

Myers CL, Chen X, Troyanskaya OG.

BMC Bioinformatics. 2005 Jun 13;6:146.

16.

Robust smooth segmentation approach for array CGH data analysis.

Huang J, Gusnanto A, O'Sullivan K, Staaf J, Borg A, Pawitan Y.

Bioinformatics. 2007 Sep 15;23(18):2463-9. Epub 2007 Jul 27.

PMID:
17660206
17.

Assembly of microarrays for genome-wide measurement of DNA copy number.

Snijders AM, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, Law S, Myambo K, Palmer J, Ylstra B, Yue JP, Gray JW, Jain AN, Pinkel D, Albertson DG.

Nat Genet. 2001 Nov;29(3):263-4.

PMID:
11687795
18.

Exon array CGH: detection of copy-number changes at the resolution of individual exons in the human genome.

Dhami P, Coffey AJ, Abbs S, Vermeesch JR, Dumanski JP, Woodward KJ, Andrews RM, Langford C, Vetrie D.

Am J Hum Genet. 2005 May;76(5):750-62. Epub 2005 Mar 8.

19.

Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression.

Yao J, Weremowicz S, Feng B, Gentleman RC, Marks JR, Gelman R, Brennan C, Polyak K.

Cancer Res. 2006 Apr 15;66(8):4065-78.

20.

Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression.

de Tayrac M, Etcheverry A, Aubry M, Saïkali S, Hamlat A, Quillien V, Le Treut A, Galibert MD, Mosser J.

Genes Chromosomes Cancer. 2009 Jan;48(1):55-68. doi: 10.1002/gcc.20618.

Supplemental Content

Support Center