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Items: 1 to 20 of 95

1.

A comprehensive transcript index of the human genome generated using microarrays and computational approaches.

Schadt EE, Edwards SW, GuhaThakurta D, Holder D, Ying L, Svetnik V, Leonardson A, Hart KW, Russell A, Li G, Cavet G, Castle J, McDonagh P, Kan Z, Chen R, Kasarskis A, Margarint M, Caceres RM, Johnson JM, Armour CD, Garrett-Engele PW, Tsinoremas NF, Shoemaker DD.

Genome Biol. 2004;5(10):R73.

2.

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.

Emanuelsson O, Nagalakshmi U, Zheng D, Rozowsky JS, Urban AE, Du J, Lian Z, Stolc V, Weissman S, Snyder M, Gerstein MB.

Genome Res. 2007 Jun;17(6):886-97.

3.

Experimental annotation of the human genome using microarray technology.

Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, McDonagh PD, Loerch PM, Leonardson A, Lum PY, Cavet G, Wu LF, Altschuler SJ, Edwards S, King J, Tsang JS, Schimmack G, Schelter JM, Koch J, Ziman M, Marton MJ, Li B, Cundiff P, Ward T, Castle J, Krolewski M, Meyer MR, Mao M, Burchard J, Kidd MJ, Dai H, Phillips JW, Linsley PS, Stoughton R, Scherer S, Boguski MS.

Nature. 2001 Feb 15;409(6822):922-7.

PMID:
11237012
4.

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.

Johnson JM, Edwards S, Shoemaker D, Schadt EE.

Trends Genet. 2005 Feb;21(2):93-102. Review.

PMID:
15661355
5.

Transcriptional and post-transcriptional profile of human chromosome 21.

Nikolaev SI, Deutsch S, Genolet R, Borel C, Parand L, Ucla C, Schütz F, Duriaux Sail G, Dupré Y, Jaquier-Gubler P, Araud T, Conne B, Descombes P, Vassalli JD, Curran J, Antonarakis SE.

Genome Res. 2009 Aug;19(8):1471-9. doi: 10.1101/gr.089425.108.

6.

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution.

Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S, Long J, Stern D, Tammana H, Helt G, Sementchenko V, Piccolboni A, Bekiranov S, Bailey DK, Ganesh M, Ghosh S, Bell I, Gerhard DS, Gingeras TR.

Science. 2005 May 20;308(5725):1149-54.

8.

Efficient oligonucleotide probe selection for pan-genomic tiling arrays.

Phillippy AM, Deng X, Zhang W, Salzberg SL.

BMC Bioinformatics. 2009 Sep 16;10:293. doi: 10.1186/1471-2105-10-293.

9.

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery.

Bertone P, Gerstein M, Snyder M.

Chromosome Res. 2005;13(3):259-74. Review.

PMID:
15868420
10.

High sensitivity TSS prediction: estimates of locations where TSS cannot occur.

Schaefer U, Kodzius R, Kai C, Kawai J, Carninci P, Hayashizaki Y, Bajic VB.

PLoS One. 2010 Nov 15;5(11):e13934. doi: 10.1371/journal.pone.0013934.

11.

Experimental annotation of the human pathogen Histoplasma capsulatum transcribed regions using high-resolution tiling arrays.

Voorhies M, Foo CK, Sil A.

BMC Microbiol. 2011 Sep 29;11:216. doi: 10.1186/1471-2180-11-216.

12.

High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations.

Wallace JC, Korth MJ, Paeper B, Proll SC, Thomas MJ, Magness CL, Iadonato SP, Nelson C, Katze MG.

BMC Genomics. 2007 Jan 23;8:28.

13.

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

14.

A gene expression map for the euchromatic genome of Drosophila melanogaster.

Stolc V, Gauhar Z, Mason C, Halasz G, van Batenburg MF, Rifkin SA, Hua S, Herreman T, Tongprasit W, Barbano PE, Bussemaker HJ, White KP.

Science. 2004 Oct 22;306(5696):655-60.

15.

Analysis of DNA strand-specific differential expression with high density tiling microarrays.

Quintales L, Sánchez M, Antequera F.

BMC Bioinformatics. 2010 Mar 17;11:136. doi: 10.1186/1471-2105-11-136.

16.

Genome-wide transcription analyses in rice using tiling microarrays.

Li L, Wang X, Stolc V, Li X, Zhang D, Su N, Tongprasit W, Li S, Cheng Z, Wang J, Deng XW.

Nat Genet. 2006 Jan;38(1):124-9.

PMID:
16369532
17.

Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture.

Li L, Wang X, Xia M, Stolc V, Su N, Peng Z; Waraporn Tongprasit., Li S, Wang J, Wang X, Deng XW.

Genome Biol. 2005;6(6):R52. Erratum in: Genome Biol. 2005;6(8):403. Waraporn Tongprasit [added].

18.

Identification of a novel gene by whole human genome tiling array.

Ishida H, Yagi T, Tanaka M, Tokuda Y, Kamoi K, Hongo F, Kawauchi A, Nakano M, Miki T, Tashiro K.

Gene. 2013 Mar 1;516(1):33-8. doi: 10.1016/j.gene.2012.11.076.

PMID:
23261826
19.

Two recombinant human interferon-beta 1a pharmaceutical preparations produce a similar transcriptional response determined using whole genome microarray analysis.

Prync AE, Yankilevich P, Barrero PR, Bello R, Marangunich L, Vidal A, Criscuolo M, Benasayag L, Famulari AL, Domínguez RO, Kauffman MA, Diez RA.

Int J Clin Pharmacol Ther. 2008 Feb;46(2):64-71.

PMID:
18218286
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