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Items: 1 to 20 of 120

2.

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

3.

The COG database: an updated version includes eukaryotes.

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

BMC Bioinformatics. 2003 Sep 11;4:41. Epub 2003 Sep 11.

4.

Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.

Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR, Creelman R, Pilgrim M, Broun P, Zhang JZ, Ghandehari D, Sherman BK, Yu G.

Science. 2000 Dec 15;290(5499):2105-10.

5.

Contribution of sponge genes to unravel the genome of the hypothetical ancestor of Metazoa (Urmetazoa).

Müller WE, Schröder HC, Skorokhod A, Bünz C, Müller IM, Grebenjuk VA.

Gene. 2001 Oct 3;276(1-2):161-73. Review.

PMID:
11591483
6.

Birth and death of duplicated genes in completely sequenced eukaryotes.

Wagner A.

Trends Genet. 2001 May;17(5):237-9. Review.

PMID:
11335019
7.
8.

Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.

Pandey R, Müller A, Napoli CA, Selinger DA, Pikaard CS, Richards EJ, Bender J, Mount DW, Jorgensen RA.

Nucleic Acids Res. 2002 Dec 1;30(23):5036-55.

10.

A general tendency for conservation of protein length across eukaryotic kingdoms.

Wang D, Hsieh M, Li WH.

Mol Biol Evol. 2005 Jan;22(1):142-7. Epub 2004 Sep 15.

PMID:
15371528
11.

Guanosine distribution and oxidation resistance in eight eukaryotic genomes.

Friedman KA, Heller A.

J Am Chem Soc. 2004 Mar 3;126(8):2368-71.

PMID:
14982441
12.

Pattern and timing of gene duplication in animal genomes.

Friedman R, Hughes AL.

Genome Res. 2001 Nov;11(11):1842-7.

13.

Preferential loss and gain of introns in 3' portions of genes suggests a reverse-transcription mechanism of intron insertion.

Sverdlov AV, Babenko VN, Rogozin IB, Koonin EV.

Gene. 2004 Aug 18;338(1):85-91.

PMID:
15302409
14.
15.

The role of lineage-specific gene family expansion in the evolution of eukaryotes.

Lespinet O, Wolf YI, Koonin EV, Aravind L.

Genome Res. 2002 Jul;12(7):1048-59.

16.

Patterns of internal gene duplication in the course of metazoan evolution.

Chen CC, Li WH, Sung HM.

Gene. 2007 Jul 1;396(1):59-65. Epub 2007 Mar 15.

PMID:
17442504
17.

Codon usage bias is correlated with gene expression levels in the fission yeast Schizosaccharomyces pombe.

Hiraoka Y, Kawamata K, Haraguchi T, Chikashige Y.

Genes Cells. 2009 Apr;14(4):499-509. doi: 10.1111/j.1365-2443.2009.01284.x. Erratum in: Genes Cells. 2010 Jun;15(7):799-800.

18.
19.

Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation.

Hannay K, Marcotte EM, Vogel C.

BMC Genomics. 2008 Dec 16;9:609. doi: 10.1186/1471-2164-9-609.

20.

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