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15356285,22115576,15805009,18450714,15324845,17911299,17662842,15288063,19946058,19166882,15904853,16904677,18929672,16684595,15189285,15019621,15357399,18251803,19121402,14627145,19426278,11476631,15062795,10647048,17174576,16012099,12949141,16971080,17346935,17434693,19903531,18022189,15186794,8158485,18266638,17320334,12486534,8744763,19036635,19800399,16584863,19678831,15205048,10508549,17072532,11697923,15175312,19329598,18523188,16990016,15923129,16161065,15545250,18672078,15579379,15324850,18334303,17184287,19217347,11943094,15194191,10631046,11431701,17532615,19477283,15542100,11603946,10942614,16503280,25428416,21633114,10679161,9170348,18614527,20337805,15780978,16182152,15950132,18175701,15689526,12228000,18358745,20152915,19883444,11133197,15545254,7620638,15019618,16839812,17374158,12069546,17416466,21693192,12898422,20796132,11820839,11675608,9299223,18271244,9299228,20497286,19883449,18686195,20153693,8975694,10877939,12107593,11277628,14963093,9007025,24097832,10051383,9299218,14967233,19948233,22154623,11161742,11020306,21420905,15324838,22182729,10508535,12569426,15305922,15217735,11479680,17511874,11243926,11399152,15305915,15288061,11133189,7927064,12698292,17071787,14739253,8691370,9562987,9538024,15288054,19698795,14660689,15148427,11603939,19674933,10051387,9299224,7972353,16517861,22641172,20123129,11527464,15288064,8042708,8604099,14668119,10603256,20530152,16738095,7746863,15062788,18709599,20702136,22080850,9007020,26837779,11861888,12113306,14733439,15324843,12396591,15186825,7765500,15223037,9479693,10440724,15288074,7697190,8025718,20525603,15062783,23575986,9299229,15932645,12885954,9666460,23904187,16627635,15288049,11020303,15019608,22465402,15166018,15918479,12069545,12089300,20089123,21398102,20525606,15324842,12907801,8845967,15562612,10764532,12116592,15280320,9756713,19589664,14553926,10877941,8899726,15186813,12391844,12679527,20817437,12244690,15023980,11504944,20211743,10207368,20525609,12747404,15288055,11161741,12567629,19883443,10082608,11523007,11821917,15163768,15012936,10620411,7521252,8081546,21296924,10714774,21503713,8728400,10413625,15634993,9187089,15305921,9126564,20547780,10712842,22643288,15050536,10712845,10724517,19149157,22306043,21376728,15223030,9588802,15248131,15288059,11603945,15120402,20113379,9878227,10679156,19418092,20132899,22491071,15120407,12608570,12803385,23403224,11741383,23500334,10837149,10191076,15179056,15112225,19720151,20540604,11133188,15306658,17392434,8934592,21402450,15062803,20061504,15329385,8899723,12552809,9426137,1731224,9878233,14681368,15140093,8623526,11399150,20451886,10860645,16325541,11678226,15109147,15120397,11476638,10837150,25660375,15003120,7563123,9053909,22846682,11401036,22326855,20637896,27889948,8975690,12760245,15186354,12777522,10795828,15120387,21867590,11341800,12567687,10092980,8145260,10991798,12355262,10340475,19835964,21782931,21539924,2497353,9242597,16121233,15068356,9878236,15186798,15013740,12125754,22808216,9007026,14993833,18174295,11399146,21569160,11642131,19775875,14960036,11956688,12165845,26341800,15805727,11116330,14526531,23742885,15120396,11847559,12172812,15210350,22378805,11821918,11961109,18304338,15175415,9467105,25250663,11411693,10656777,11931166,7877495,12270904,15019631,11198014,15261772,23541839,10028289,21851858,15028287,15830814,14961179,11939073,9159927,24583288,15012959,23707703,8742633,21129085,20525587,8812305,3197135,11603934,10381315,20525605,15918476,21303824,18303769,9667994,9242594,11422319,10082607,11191808,15062791,15019606,15176975,9399829,8590690,21095084,8025723,24075983,15142247,24089331,12043569,7963643,9435081,15056930,15290383,9511749,15120386,15008408,11470518,8714123,12812373,15288048,21784703,10461381,22355318,23194990,15324852,12884129,15012942,22694720,19501101,23194754,9414573,16419766,15120385,15271071,19768503,15305796,12355265,21642338,12107599,9417895,15120409,15186795,3148747,12383753,15288058,7538283,8940915,15230967,12193809,9115176,22197803,20525571,8652131,14631648,22639929,12572607,11341811,21437252,10658667,23142112,11212894,14650057,23747522,15364970,21030427,8550293,11427549,10633498,7666449,9718722,31146023,17708761,18367290,21527387,21156556,24148615,22319139,11938472,24622302,11605545,17284401,11760945,12656194,15274624,10527922,29041958,19692665,15305792,12165843,8251943,9126565,9835693,15983872,20692352,15062793,34710512,12118406,7614369,18303768,22445448,15019627,11699879,11914343,15084680,3137351,24747002,17725830,8779589,29621975,25857192,17824773,17896067,8042707,23247042,21674231,11923353,12118409,20553352,21094181,34384346,26199366,27811180,17345678,12803902,11969392,20177717,12098695,8863429,22607262,20973741,9541539,25594436,15337161,9000749,21912589,11110900,15341642,29305244,15696367,10611671,20525619,26264559,27855631,12177440,7197304,22154141,23608518,22650428,15044593,30039323,25752803,12949128,24951558,12656195,22192529,20116981,28919505,20662380,17551247,23028445,10082610,12927138,9880918,23761246,7615749,12118404,96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Evolution of the RNA polymerase B' subunit gene (rpoB') in Halobacteriales: a complementary molecular marker to the SSU rRNA gene.

Walsh DA, Bapteste E, Kamekura M, Doolittle WF. Walsh DA, et al. Mol Biol Evol. 2004 Dec;21(12):2340-51. doi: 10.1093/molbev/msh248. Epub 2004 Sep 8. Mol Biol Evol. 2004. PMID: 15356285

RNA polymerase beta subunit (rpoB) gene and the 16S-23S rRNA intergenic transcribed spacer region (ITS) as complementary molecular markers in addition to the 16S rRNA gene for phylogenetic analysis and identification of the species of the family Mycoplasmataceae.

Volokhov DV, Simonyan V, Davidson MK, Chizhikov VE. Volokhov DV, et al. Mol Phylogenet Evol. 2012 Jan;62(1):515-28. doi: 10.1016/j.ympev.2011.11.002. Epub 2011 Nov 17. Mol Phylogenet Evol. 2012. PMID: 22115576

Is homoplasy or lineage sorting the source of incongruent mtdna and nuclear gene trees in the stiff-tailed ducks (Nomonyx-Oxyura)?

McCracken K, Sorenson M. McCracken K, et al. Syst Biol. 2005 Feb;54(1):35-55. doi: 10.1080/10635150590910249. Syst Biol. 2005. PMID: 15805009

Phylogenetic relationships amongst the saltwater members of the genus Bacteriovorax using rpoB sequences and reclassification of Bacteriovorax stolpii as Bacteriolyticum stolpii gen. nov., comb. nov.

Piñeiro SA, Williams HN, Stine OC. Piñeiro SA, et al. Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1203-9. doi: 10.1099/ijs.0.65710-0. Int J Syst Evol Microbiol. 2008. PMID: 18450714

Morphological convergence characterizes the evolution of Xanthophyceae (Heterokontophyta): evidence from nuclear SSU rDNA and plastidial rbcL genes.

Negrisolo E, Maistro S, Incarbone M, Moro I, Dalla Valle L, Broady PA, Andreoli C. Negrisolo E, et al. Mol Phylogenet Evol. 2004 Oct;33(1):156-70. doi: 10.1016/j.ympev.2004.04.016. Mol Phylogenet Evol. 2004. PMID: 15324845

Phylogenetic relationships within the family Halobacteriaceae inferred from rpoB' gene and protein sequences.

Enache M, Itoh T, Fukushima T, Usami R, Dumitru L, Kamekura M. Enache M, et al. Int J Syst Evol Microbiol. 2007 Oct;57(Pt 10):2289-2295. doi: 10.1099/ijs.0.65190-0. Int J Syst Evol Microbiol. 2007. PMID: 17911299

Evolution of RNA editing sites in the mitochondrial small subunit rRNA of the Myxomycota.

Krishnan U, Barsamian A, Miller DL. Krishnan U, et al. Methods Enzymol. 2007;424:197-220. doi: 10.1016/S0076-6879(07)24009-1. Methods Enzymol. 2007. PMID: 17662842

Phylogenetic investigations of Antarctic notothenioid fishes (Perciformes: Notothenioidei) using complete gene sequences of the mitochondrial encoded 16S rRNA.

Near TJ, Pesavento JJ, Cheng CH. Near TJ, et al. Mol Phylogenet Evol. 2004 Sep;32(3):881-91. doi: 10.1016/j.ympev.2004.01.002. Mol Phylogenet Evol. 2004. PMID: 15288063

Further refinement of the phylogeny of the Halobacteriaceae based on the full-length RNA polymerase subunit B' (rpoB') gene.

Minegishi H, Kamekura M, Itoh T, Echigo A, Usami R, Hashimoto T. Minegishi H, et al. Int J Syst Evol Microbiol. 2010 Oct;60(Pt 10):2398-2408. doi: 10.1099/ijs.0.017160-0. Epub 2009 Nov 27. Int J Syst Evol Microbiol. 2010. PMID: 19946058

Discovery of marine Bacillus species by 16S rRNA and rpoB comparisons and their usefulness for species identification.

Ki JS, Zhang W, Qian PY. Ki JS, et al. J Microbiol Methods. 2009 Apr;77(1):48-57. doi: 10.1016/j.mimet.2009.01.003. Epub 2009 Jan 7. J Microbiol Methods. 2009. PMID: 19166882

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