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Items: 1 to 20 of 403

1.

Predicting protein-peptide interactions via a network-based motif sampler.

Reiss DJ, Schwikowski B.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i274-82.

PMID:
15262809
2.

A regularized discriminative model for the prediction of protein-peptide interactions.

Lehrach WP, Husmeier D, Williams CK.

Bioinformatics. 2006 Mar 1;22(5):532-40. Epub 2006 Jan 5.

PMID:
16397010
3.

Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions.

Schillinger C, Boisguerin P, Krause G.

Bioinformatics. 2009 Jul 1;25(13):1632-9. doi: 10.1093/bioinformatics/btp264. Epub 2009 Apr 17.

PMID:
19376827
4.

Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain.

Hou T, Zhang W, Case DA, Wang W.

J Mol Biol. 2008 Feb 29;376(4):1201-14. doi: 10.1016/j.jmb.2007.12.054. Epub 2008 Jan 3.

PMID:
18206907
5.

Computational prediction of protein-protein interactions.

Obenauer JC, Yaffe MB.

Methods Mol Biol. 2004;261:445-68. Review.

PMID:
15064475
6.

Equivalent binding sites reveal convergently evolved interaction motifs.

Henschel A, Kim WK, Schroeder M.

Bioinformatics. 2006 Mar 1;22(5):550-5. Epub 2005 Nov 15.

PMID:
16287935
7.

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.

Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, Cesareni G.

Science. 2002 Jan 11;295(5553):321-4. Epub 2001 Dec 13.

8.

Prediction of Ras-effector interactions using position energy matrices.

Kiel C, Serrano L.

Bioinformatics. 2007 Sep 1;23(17):2226-30. Epub 2007 Jun 28.

PMID:
17599936
9.

Predicting protein-protein interactions using signature products.

Martin S, Roe D, Faulon JL.

Bioinformatics. 2005 Jan 15;21(2):218-26. Epub 2004 Aug 19.

PMID:
15319262
10.

An integrative approach for predicting interactions of protein regions.

Schelhorn SE, Lengauer T, Albrecht M.

Bioinformatics. 2008 Aug 15;24(16):i35-41. doi: 10.1093/bioinformatics/btn290.

PMID:
18689837
11.

Regulatory motif finding by logic regression.

Keles S, van der Laan MJ, Vulpe C.

Bioinformatics. 2004 Nov 1;20(16):2799-811. Epub 2004 May 27.

PMID:
15166027
12.

Learning to predict protein-protein interactions from protein sequences.

Gomez SM, Noble WS, Rzhetsky A.

Bioinformatics. 2003 Oct 12;19(15):1875-81.

PMID:
14555619
13.

Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm.

Sánchez IE, Beltrao P, Stricher F, Schymkowitz J, Ferkinghoff-Borg J, Rousseau F, Serrano L.

PLoS Comput Biol. 2008 Apr 4;4(4):e1000052. doi: 10.1371/journal.pcbi.1000052.

14.

Accurate prediction of peptide binding sites on protein surfaces.

Petsalaki E, Stark A, García-Urdiales E, Russell RB.

PLoS Comput Biol. 2009 Mar;5(3):e1000335. doi: 10.1371/journal.pcbi.1000335. Epub 2009 Mar 27.

15.

SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family.

Brannetti B, Via A, Cestra G, Cesareni G, Helmer-Citterich M.

J Mol Biol. 2000 Apr 28;298(2):313-28.

PMID:
10764600
16.

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

Laurie AT, Jackson RM.

Bioinformatics. 2005 May 1;21(9):1908-16. Epub 2005 Feb 8.

PMID:
15701681
17.

Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces.

Aytuna AS, Gursoy A, Keskin O.

Bioinformatics. 2005 Jun 15;21(12):2850-5. Epub 2005 Apr 26.

PMID:
15855251
18.

Statistical prediction of protein chemical interactions based on chemical structure and mass spectrometry data.

Nagamine N, Sakakibara Y.

Bioinformatics. 2007 Aug 1;23(15):2004-12. Epub 2007 May 17.

PMID:
17510168
19.

Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides.

Wiedemann U, Boisguerin P, Leben R, Leitner D, Krause G, Moelling K, Volkmer-Engert R, Oschkinat H.

J Mol Biol. 2004 Oct 22;343(3):703-18.

PMID:
15465056
20.

Inferring protein-protein interactions through high-throughput interaction data from diverse organisms.

Liu Y, Liu N, Zhao H.

Bioinformatics. 2005 Aug 1;21(15):3279-85. Epub 2005 May 19.

PMID:
15905281

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