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Items: 1 to 20 of 80

1.

Reducing storage requirements for biological sequence comparison.

Roberts M, Hayes W, Hunt BR, Mount SM, Yorke JA.

Bioinformatics. 2004 Dec 12;20(18):3363-9. Epub 2004 Jul 15.

PMID:
15256412
2.

PatMaN: rapid alignment of short sequences to large databases.

Prüfer K, Stenzel U, Dannemann M, Green RE, Lachmann M, Kelso J.

Bioinformatics. 2008 Jul 1;24(13):1530-1. doi: 10.1093/bioinformatics/btn223. Epub 2008 May 8.

3.

Striped Smith-Waterman speeds database searches six times over other SIMD implementations.

Farrar M.

Bioinformatics. 2007 Jan 15;23(2):156-61. Epub 2006 Nov 16.

PMID:
17110365
4.

Memory-efficient dynamic programming backtrace and pairwise local sequence alignment.

Newberg LA.

Bioinformatics. 2008 Aug 15;24(16):1772-8. doi: 10.1093/bioinformatics/btn308. Epub 2008 Jun 16.

5.

Grammatical inference in bioinformatics.

Sakakibara Y.

IEEE Trans Pattern Anal Mach Intell. 2005 Jul;27(7):1051-62.

PMID:
16013753
6.

H-tuple approach to evaluate statistical significance of biological sequence comparison with gaps.

Fayyaz movaghar A, Mercier S, Ferré L.

Stat Appl Genet Mol Biol. 2007;6:Article 22. Epub 2007 Aug 25.

PMID:
17764441
7.

Patent searches for genetic sequences: how to retrieve relevant records from patented sequence databases.

Dufresne G, Takács L, Heus HC, Codani JJ, Duval M.

Nat Biotechnol. 2002 Dec;20(12):1269-71. No abstract available.

PMID:
12454675
8.

VisCoSe: visualization and comparison of consensus sequences.

Spitzer M, Fuellen G, Cullen P, Lorkowski S.

Bioinformatics. 2004 Feb 12;20(3):433-5. Epub 2004 Jan 22.

PMID:
14960475
9.

High similarity sequence comparison in clustering large sequence databases.

Dudoignon L, Glemet E, Heus HC, Raffinot M.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:228-36.

PMID:
15838139
10.

IPPRED: server for proteins interactions inference.

Goffard N, Garcia V, Iragne F, Groppi A, de Daruvar A.

Bioinformatics. 2003 May 1;19(7):903-4.

PMID:
12724307
11.

Pandit: a database of protein and associated nucleotide domains with inferred trees.

Whelan S, de Bakker PI, Goldman N.

Bioinformatics. 2003 Aug 12;19(12):1556-63.

PMID:
12912837
12.

Multiple spaced seeds for homology search.

Ilie L, Ilie S.

Bioinformatics. 2007 Nov 15;23(22):2969-77. Epub 2007 Sep 5.

PMID:
17804438
13.

GeneCards 2002: towards a complete, object-oriented, human gene compendium.

Safran M, Solomon I, Shmueli O, Lapidot M, Shen-Orr S, Adato A, Ben-Dor U, Esterman N, Rosen N, Peter I, Olender T, Chalifa-Caspi V, Lancet D.

Bioinformatics. 2002 Nov;18(11):1542-3.

PMID:
12424129
14.

MagicMatch--cross-referencing sequence identifiers across databases.

Smith M, Kunin V, Goldovsky L, Enright AJ, Ouzounis CA.

Bioinformatics. 2005 Aug 15;21(16):3429-30. Epub 2005 Jun 16.

PMID:
15961438
15.

A memory-efficient algorithm for multiple sequence alignment with constraints.

Lu CL, Huang YP.

Bioinformatics. 2005 Jan 1;21(1):20-30. Epub 2004 Sep 16.

PMID:
15374876
16.

Web-based interface facilitating sequence-to-structure analysis of BLAST alignment reports.

Ganesan N, Bennett NF, Velauthapillai M, Pattabiraman N, Squier R, Kalyanasundaram B.

Biotechniques. 2005 Aug;39(2):186, 188. No abstract available.

17.

Panta rhei (QAlign2): an open graphical environment for sequence analysis.

Sammeth M, Griebel T, Tille F, Stoye J.

Bioinformatics. 2006 Apr 1;22(7):889-90. Epub 2006 Jan 17.

PMID:
16418234
18.

MuSiC: a tool for multiple sequence alignment with constraints.

Tsai YT, Huang YP, Yu CT, Lu CL.

Bioinformatics. 2004 Sep 22;20(14):2309-11. Epub 2004 Apr 1.

PMID:
15059840
19.

HotSwap for bioinformatics: a STRAP tutorial.

Gille C, Robinson PN.

BMC Bioinformatics. 2006 Feb 9;7:64.

20.

Using the blocks database to recognize functional domains.

Henikoff JG, Greene EA, Taylor N, Henikoff S, Pietrokovski S.

Curr Protoc Bioinformatics. 2002 Aug;Chapter 2:Unit 2.2. doi: 10.1002/0471250953.bi0202s00.

PMID:
18792933

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