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Items: 1 to 20 of 112

1.

Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins.

Pandey N, Ganapathi M, Kumar K, Dasgupta D, Das Sutar SK, Dash D.

Bioinformatics. 2004 Nov 22;20(17):2904-10. Epub 2004 Jun 4.

PMID:
15238363
2.

Prediction of unfolded segments in a protein sequence based on amino acid composition.

Coeytaux K, Poupon A.

Bioinformatics. 2005 May 1;21(9):1891-900. Epub 2005 Jan 18.

PMID:
15657106
3.

FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded.

Prilusky J, Felder CE, Zeev-Ben-Mordehai T, Rydberg EH, Man O, Beckmann JS, Silman I, Sussman JL.

Bioinformatics. 2005 Aug 15;21(16):3435-8. Epub 2005 Jun 14.

PMID:
15955783
4.

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.

Dosztányi Z, Csizmok V, Tompa P, Simon I.

Bioinformatics. 2005 Aug 15;21(16):3433-4. Epub 2005 Jun 14.

PMID:
15955779
5.

Natively unfolded proteins.

Fink AL.

Curr Opin Struct Biol. 2005 Feb;15(1):35-41. Review.

PMID:
15718131
6.

Optimizing long intrinsic disorder predictors with protein evolutionary information.

Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK, Obradovic Z.

J Bioinform Comput Biol. 2005 Feb;3(1):35-60.

PMID:
15751111
7.

[Prediction of natively unfolded regions in protein chain].

Galzitskaia OV, Garbuzinskiĭ SA, Lobanov MIu.

Mol Biol (Mosk). 2006 Mar-Apr;40(2):341-8. Russian.

PMID:
16637275
8.

Using Bayesian multinomial classifier to predict whether a given protein sequence is intrinsically disordered.

Bulashevska A, Eils R.

J Theor Biol. 2008 Oct 21;254(4):799-803. doi: 10.1016/j.jtbi.2008.05.040. Epub 2008 Jun 14.

PMID:
18611404
9.

Prediction of protein coarse contact maps.

Vullo A, Frasconi P.

J Bioinform Comput Biol. 2003 Jul;1(2):411-31.

PMID:
15290778
10.

Comparative evolutionary analysis of VPS33 homologues: genetic and functional insights.

Gissen P, Johnson CA, Gentle D, Hurst LD, Doherty AJ, O'Kane CJ, Kelly DA, Maher ER.

Hum Mol Genet. 2005 May 15;14(10):1261-70. Epub 2005 Mar 24.

PMID:
15790593
11.

POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions.

Hirose S, Shimizu K, Kanai S, Kuroda Y, Noguchi T.

Bioinformatics. 2007 Aug 15;23(16):2046-53. Epub 2007 Jun 1.

PMID:
17545177
12.

Comparative analysis of structural properties of the C-type-lectin-like domain (CTLD).

Zelensky AN, Gready JE.

Proteins. 2003 Aug 15;52(3):466-77.

PMID:
12866057
13.

Evolutionary conservation in protein folding kinetics.

Plaxco KW, Larson S, Ruczinski I, Riddle DS, Thayer EC, Buchwitz B, Davidson AR, Baker D.

J Mol Biol. 2000 Apr 28;298(2):303-12.

PMID:
10764599
14.

Natively disordered proteins: functions and predictions.

Romero P, Obradovic Z, Dunker AK.

Appl Bioinformatics. 2004;3(2-3):105-13. Review.

PMID:
15693736
15.

Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces.

Aytuna AS, Gursoy A, Keskin O.

Bioinformatics. 2005 Jun 15;21(12):2850-5. Epub 2005 Apr 26.

PMID:
15855251
16.

Multiple flexible structure alignment using partial order graphs.

Ye Y, Godzik A.

Bioinformatics. 2005 May 15;21(10):2362-9. Epub 2005 Mar 3.

PMID:
15746292
17.

ProtRepeatsDB: a database of amino acid repeats in genomes.

Kalita MK, Ramasamy G, Duraisamy S, Chauhan VS, Gupta D.

BMC Bioinformatics. 2006 Jul 7;7:336.

18.

Disorder and sequence repeats in hub proteins and their implications for network evolution.

Dosztányi Z, Chen J, Dunker AK, Simon I, Tompa P.

J Proteome Res. 2006 Nov;5(11):2985-95.

PMID:
17081050
19.

Improved K-means clustering algorithm for exploring local protein sequence motifs representing common structural property.

Zhong W, Altun G, Harrison R, Tai PC, Pan Y.

IEEE Trans Nanobioscience. 2005 Sep;4(3):255-65.

PMID:
16220690
20.

Assessment of the probabilities for evolutionary structural changes in protein folds.

Viksna J, Gilbert D.

Bioinformatics. 2007 Apr 1;23(7):832-41. Epub 2007 Feb 4.

PMID:
17282999

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