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Items: 1 to 20 of 123

1.

A web-based genotyping resource for viral sequences.

Rozanov M, Plikat U, Chappey C, Kochergin A, Tatusova T.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W654-9.

2.

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.

Alcantara LC, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvão-Castro B, Vandamme AM, de Oliveira T.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W634-42. doi: 10.1093/nar/gkp455. Epub 2009 May 29.

3.

Genotyping Hepatitis B virus from whole- and sub-genomic fragments using position-specific scoring matrices in HBV STAR.

Myers R, Clark C, Khan A, Kellam P, Tedder R.

J Gen Virol. 2006 Jun;87(Pt 6):1459-64.

PMID:
16690910
4.

FLAN: a web server for influenza virus genome annotation.

Bao Y, Bolotov P, Dernovoy D, Kiryutin B, Tatusova T.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W280-4. Epub 2007 Jun 1.

5.

Clinically relevant sequence-based genotyping of HBV, HCV, CMV, and HIV.

Arens M.

J Clin Virol. 2001 Aug;22(1):11-29. Review.

PMID:
11418349
6.

Hepatitis B virus genotypes and genome characteristics in China.

Li HM, Wang JQ, Wang R, Zhao Q, Li L, Zhang JP, Shen T.

World J Gastroenterol. 2015 Jun 7;21(21):6684-97. doi: 10.3748/wjg.v21.i21.6684.

7.

Complete nucleotide sequence of genotype 4 hepatitis C viruses isolated from patients co-infected with human immunodeficiency virus type 1.

Franco S, Tural C, Clotet B, Martínez MA.

Virus Res. 2007 Feb;123(2):161-9. Epub 2006 Oct 4.

PMID:
17023084
8.

A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis.

Kim J, Ahn Y, Lee K, Park SH, Kim S.

BMC Bioinformatics. 2010 Aug 21;11:434. doi: 10.1186/1471-2105-11-434.

9.

Genotyping of hepatitis B virus isolated from chronic hepatitis B patients in the south of Turkey by DNA cycle-sequencing method.

Serin MS, Akkiz H, Abayli B, Oksuz M, Aslan G, Emekdas G.

Diagn Microbiol Infect Dis. 2005 Sep;53(1):57-60.

PMID:
16054327
10.

Multiple genotypes and subtypes of hepatitis B and C viruses in Belarus: similarities with Russia and western European influences.

Olinger CM, Lazouskaya NV, Eremin VF, Muller CP.

Clin Microbiol Infect. 2008 Jun;14(6):575-81. doi: 10.1111/j.1469-0691.2008.01988.x. Epub 2008 Mar 27.

11.

Hepatitis B virus genotypes in Uzbekistan and validity of two different systems for genotyping.

Kato H, Ruzibakiev R, Yuldasheva N, Hegay T, Kurbanov F, Achundjanov B, Tuichiev L, Usuda S, Ueda R, Mizokami M.

J Med Virol. 2002 Aug;67(4):477-83.

PMID:
12115992
12.

Recombination Analysis Tool (RAT): a program for the high-throughput detection of recombination.

Etherington GJ, Dicks J, Roberts IN.

Bioinformatics. 2005 Feb 1;21(3):278-81. Epub 2004 Aug 27.

PMID:
15333462
13.

A new subtype (subgenotype) Ac (A3) of hepatitis B virus and recombination between genotypes A and E in Cameroon.

Kurbanov F, Tanaka Y, Fujiwara K, Sugauchi F, Mbanya D, Zekeng L, Ndembi N, Ngansop C, Kaptue L, Miura T, Ido E, Hayami M, Ichimura H, Mizokami M.

J Gen Virol. 2005 Jul;86(Pt 7):2047-56.

PMID:
15958684
14.

Identification of optimal target gene regions for hepatitis B virus genotyping by DNA sequencing.

Habbal W, Gärtner BC, Monem F.

Intervirology. 2013;56(5):325-36. doi: 10.1159/000353108. Epub 2013 Aug 20.

15.

Complete genome sequence and phylogenetic analysis of hepatitis B virus isolated from Turkish patients with chronic HBV infection.

Bozdayi G, Türkyilmaz AR, Idilman R, Karatayli E, Rota S, Yurdaydin C, Bozdayi AM.

J Med Virol. 2005 Aug;76(4):476-81.

PMID:
15977237
16.

Complete genomic sequence and phylogenetic relatedness of hepatitis B virus isolates from Iran.

Amini-Bavil-Olyaee S, Sarrami-Forooshani R, Adeli A, Sabahi F, Abachi M, Azizi M, Mahboudi F.

J Med Virol. 2005 Jul;76(3):318-26.

PMID:
15902699
17.

Molecular epidemiology of hepatitis B, C and D viruses in Turkish patients.

Bozdayi AM, Aslan N, Bozdayi G, Türkyilmaz AR, Sengezer T, Wend U, Erkan O, Aydemir F, Zakirhodjaev S, Orucov S, Bozkaya H, Gerlich W, Karayalçin S, Yurdaydin C, Uzunalimoğlu O.

Arch Virol. 2004 Nov;149(11):2115-29. Epub 2004 Jul 15.

PMID:
15503201
18.

Mutation Master: profiles of substitutions in hepatitis C virus RNA of the core, alternate reading frame, and NS2 coding regions.

Walewski JL, Gutierrez JA, Branch-Elliman W, Stump DD, Keller TR, Rodriguez A, Benson G, Branch AD.

RNA. 2002 May;8(5):557-71.

19.

Molecular and epidemiological characteristics of blood-borne virus infections among recent immigrants in Spain.

Toro C, Jiménez V, Rodríguez C, Del Romero J, Rodés B, Holguín A, Alvarez P, García-Campello M, Gómez-Hernando C, Guelar A, Sheldon J, de Mendoza C, Simón A, Soriano V.

J Med Virol. 2006 Dec;78(12):1599-608.

PMID:
17063510
20.

New natural intergenotypic (2/5) recombinant of hepatitis C virus.

Legrand-Abravanel F, Claudinon J, Nicot F, Dubois M, Chapuy-Regaud S, Sandres-Saune K, Pasquier C, Izopet J.

J Virol. 2007 Apr;81(8):4357-62. Epub 2007 Jan 31.

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