Similar articles for PMID: 15215390

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1

CREME: Cis-Regulatory Module Explorer for the human genome.

Sharan R, Ben-Hur A, Loots GG, Ovcharenko I. Sharan R, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W253-6. doi: 10.1093/nar/gkh385. Nucleic Acids Res. 2004. PMID: 15215390 Free PMC article.

2

Dcode.org anthology of comparative genomic tools.

Loots GG, Ovcharenko I. Loots GG, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W56-64. doi: 10.1093/nar/gki355. Nucleic Acids Res. 2005. PMID: 15980535 Free PMC article.

3

Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.

Kim SY, Kim Y. Kim SY, et al. BMC Bioinformatics. 2006 Jul 4;7:330. doi: 10.1186/1471-2105-7-330. BMC Bioinformatics. 2006. PMID: 16817975 Free PMC article.

4

MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.

Marinescu VD, Kohane IS, Riva A. Marinescu VD, et al. BMC Bioinformatics. 2005 Mar 30;6:79. doi: 10.1186/1471-2105-6-79. BMC Bioinformatics. 2005. PMID: 15799782 Free PMC article.

5

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.

Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E. Davuluri RV, et al. BMC Bioinformatics. 2003 Jun 23;4:25. doi: 10.1186/1471-2105-4-25. Epub 2003 Jun 23. BMC Bioinformatics. 2003. PMID: 12820902 Free PMC article.

6

WordSpy: identifying transcription factor binding motifs by building a dictionary and learning a grammar.

Wang G, Yu T, Zhang W. Wang G, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W412-6. doi: 10.1093/nar/gki492. Nucleic Acids Res. 2005. PMID: 15980501 Free PMC article.

7

FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting.

Corcoran DL, Feingold E, Benos PV. Corcoran DL, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W442-6. doi: 10.1093/nar/gki420. Nucleic Acids Res. 2005. PMID: 15980508 Free PMC article.

8

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules.

Turatsinze JV, Thomas-Chollier M, Defrance M, van Helden J. Turatsinze JV, et al. Nat Protoc. 2008;3(10):1578-88. doi: 10.1038/nprot.2008.97. Nat Protoc. 2008. PMID: 18802439

9

CONREAL web server: identification and visualization of conserved transcription factor binding sites.

Berezikov E, Guryev V, Cuppen E. Berezikov E, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W447-50. doi: 10.1093/nar/gki378. Nucleic Acids Res. 2005. PMID: 15980509 Free PMC article.

10

AthaMap web tools for database-assisted identification of combinatorial cis-regulatory elements and the display of highly conserved transcription factor binding sites in Arabidopsis thaliana.

Steffens NO, Galuschka C, Schindler M, Bülow L, Hehl R. Steffens NO, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W397-402. doi: 10.1093/nar/gki395. Nucleic Acids Res. 2005. PMID: 15980498 Free PMC article.

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