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Items: 1 to 20 of 83

1.

Integrative analysis of cell cycle control in budding yeast.

Chen KC, Calzone L, Csikasz-Nagy A, Cross FR, Novak B, Tyson JJ.

Mol Biol Cell. 2004 Aug;15(8):3841-62.

2.

Computer evaluation of network dynamics models with application to cell cycle control in budding yeast.

Allen NA, Chen KC, Shaffer CA, Tyson JJ, Watson LT.

Syst Biol (Stevenage). 2006 Jan;153(1):13-21.

PMID:
16983831
3.

A minimal mathematical model combining several regulatory cycles from the budding yeast cell cycle.

Sriram K, Bernot G, Képès F.

IET Syst Biol. 2007 Nov;1(6):326-41.

PMID:
18203579
4.

Time scale and dimension analysis of a budding yeast cell cycle model.

Lovrics A, Csikász-Nagy A, Zsély IG, Zádor J, Turányi T, Novák B.

BMC Bioinformatics. 2006 Nov 9;7:494.

5.

Ergodic sets as cell phenotype of budding yeast cell cycle.

Todd RG, Helikar T.

PLoS One. 2012;7(10):e45780. doi: 10.1371/journal.pone.0045780.

6.

Modular logical modelling of the budding yeast cell cycle.

Fauré A, Naldi A, Lopez F, Chaouiya C, Ciliberto A, Thieffry D.

Mol Biosyst. 2009 Dec;5(12):1787-96. doi: 10.1039/B910101m.

PMID:
19763337
7.
8.

Mode locking the cell cycle.

Cross FR, Siggia ED.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Aug;72(2 Pt 1):021910.

PMID:
16196607
9.

Interplay of transcriptional and proteolytic regulation in driving robust cell cycle progression.

Freire P, Vinod PK, Novak B.

Mol Biosyst. 2012 Mar;8(3):863-70. doi: 10.1039/c2mb05406j.

PMID:
22237794
10.

A data integration approach for cell cycle analysis oriented to model simulation in systems biology.

Alfieri R, Merelli I, Mosca E, Milanesi L.

BMC Syst Biol. 2007 Aug 1;1:35.

11.

Molecular network dynamics of cell cycle control: transitions to start and finish.

Csikász-Nagy A, Palmisano A, Zámborszky J.

Methods Mol Biol. 2011;761:277-91. doi: 10.1007/978-1-61779-182-6_19. Review.

PMID:
21755456
12.

Testing a mathematical model of the yeast cell cycle.

Cross FR, Archambault V, Miller M, Klovstad M.

Mol Biol Cell. 2002 Jan;13(1):52-70.

13.

A comprehensive molecular interaction map of the budding yeast cell cycle.

Kaizu K, Ghosh S, Matsuoka Y, Moriya H, Shimizu-Yoshida Y, Kitano H.

Mol Syst Biol. 2010 Sep 21;6:415. doi: 10.1038/msb.2010.73. Review.

14.

Boolean network model predicts knockout mutant phenotypes of fission yeast.

Davidich MI, Bornholdt S.

PLoS One. 2013 Sep 19;8(9):e71786. doi: 10.1371/journal.pone.0071786.

15.

Stochastic Petri Net extension of a yeast cell cycle model.

Mura I, Csikász-Nagy A.

J Theor Biol. 2008 Oct 21;254(4):850-60. doi: 10.1016/j.jtbi.2008.07.019.

PMID:
18703074
16.

Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model.

Oguz C, Laomettachit T, Chen KC, Watson LT, Baumann WT, Tyson JJ.

BMC Syst Biol. 2013 Jun 28;7:53. doi: 10.1186/1752-0509-7-53.

17.

Logical analysis of the budding yeast cell cycle.

Irons DJ.

J Theor Biol. 2009 Apr 21;257(4):543-59. doi: 10.1016/j.jtbi.2008.12.028.

PMID:
19185585
18.

Analysis of a generic model of eukaryotic cell-cycle regulation.

Csikász-Nagy A, Battogtokh D, Chen KC, Novák B, Tyson JJ.

Biophys J. 2006 Jun 15;90(12):4361-79.

19.

Checking cell size in budding yeast: a systems biology approach.

Alberghina L, Rossi RL, Wanke V, Querin L, Vanoni M.

Ital J Biochem. 2003 Mar;52(1):55-7. Review.

PMID:
12833640
20.

Uncovering novel cell cycle players through the inactivation of securin in budding yeast.

Sarin S, Ross KE, Boucher L, Green Y, Tyers M, Cohen-Fix O.

Genetics. 2004 Nov;168(3):1763-71.

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