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Items: 1 to 20 of 105

1.

Gene finding in novel genomes.

Korf I.

BMC Bioinformatics. 2004 May 14;5:59.

2.

Genomic gene clustering analysis of pathways in eukaryotes.

Lee JM, Sonnhammer EL.

Genome Res. 2003 May;13(5):875-82. Epub 2003 Apr 14. Erratum in: Genome Res. 2004 Dec;14(12):2510.

3.

Pattern and timing of gene duplication in animal genomes.

Friedman R, Hughes AL.

Genome Res. 2001 Nov;11(11):1842-7.

4.

Comparison of complete nuclear receptor sets from the human, Caenorhabditis elegans and Drosophila genomes.

Maglich JM, Sluder A, Guan X, Shi Y, McKee DD, Carrick K, Kamdar K, Willson TM, Moore JT.

Genome Biol. 2001;2(8):RESEARCH0029. Epub 2001 Jul 24.

5.

Mystery of intron gain.

Fedorov A, Roy S, Fedorova L, Gilbert W.

Genome Res. 2003 Oct;13(10):2236-41. Epub 2003 Sep 15.

6.

nGASP--the nematode genome annotation assessment project.

Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D; nGASP Consortium, Stein LD.

BMC Bioinformatics. 2008 Dec 19;9:549. doi: 10.1186/1471-2105-9-549.

7.

Longer first introns are a general property of eukaryotic gene structure.

Bradnam KR, Korf I.

PLoS One. 2008 Aug 29;3(8):e3093. doi: 10.1371/journal.pone.0003093.

8.

The role of lineage-specific gene family expansion in the evolution of eukaryotes.

Lespinet O, Wolf YI, Koonin EV, Aravind L.

Genome Res. 2002 Jul;12(7):1048-59.

9.

mGene: accurate SVM-based gene finding with an application to nematode genomes.

Schweikert G, Zien A, Zeller G, Behr J, Dieterich C, Ong CS, Philips P, De Bona F, Hartmann L, Bohlen A, Krüger N, Sonnenburg S, Rätsch G.

Genome Res. 2009 Nov;19(11):2133-43. doi: 10.1101/gr.090597.108. Epub 2009 Jun 29.

10.
11.

Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosophila.

Boudet N, Aubourg S, Toffano-Nioche C, Kreis M, Lecharny A.

Genome Res. 2001 Dec;11(12):2101-14.

12.

Transcendent elements: whole-genome transposon screens and open evolutionary questions.

Holmes I.

Genome Res. 2002 Aug;12(8):1152-5. Review. No abstract available.

13.

Genome-scale compositional comparisons in eukaryotes.

Gentles AJ, Karlin S.

Genome Res. 2001 Apr;11(4):540-6.

14.

Genetics. Revealing the dark matter of the genome.

Blaxter M.

Science. 2010 Dec 24;330(6012):1758-9. doi: 10.1126/science.1200700. Epub 2010 Dec 22. No abstract available.

PMID:
21177977
15.

Minimal introns are not "junk".

Yu J, Yang Z, Kibukawa M, Paddock M, Passey DA, Wong GK.

Genome Res. 2002 Aug;12(8):1185-9.

16.

The regulatory content of intergenic DNA shapes genome architecture.

Nelson CE, Hersh BM, Carroll SB.

Genome Biol. 2004;5(4):R25. Epub 2004 Mar 15.

17.

Translating genome sequences into biological understanding.

Iyer VR.

Genome Biol. 2003;4(6):324. Epub 2003 May 23. No abstract available.

18.

Computational gene prediction using multiple sources of evidence.

Allen JE, Pertea M, Salzberg SL.

Genome Res. 2004 Jan;14(1):142-8.

19.

Genome-wide prediction of C. elegans genetic interactions.

Zhong W, Sternberg PW.

Science. 2006 Mar 10;311(5766):1481-4.

20.

Comparative biology and genomics join forces to decipher the diversity of life.

King N.

Genome Biol. 2002 Jul 15;3(8):REPORTS4023. Epub 2002 Jul 15.

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