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Items: 1 to 20 of 166

1.

CisML: an XML-based format for sequence motif detection software.

Haverty PM, Weng Z.

Bioinformatics. 2004 Jul 22;20(11):1815-7. Epub 2004 Mar 4.

PMID:
15001475
2.

An extensible automated protein annotation tool: standardizing input and output using validated XML.

Deevi SV, Martin AC.

Bioinformatics. 2006 Feb 1;22(3):291-6. Epub 2005 Dec 8.

PMID:
16339285
3.

Soap-HT-BLAST: high throughput BLAST based on Web services.

Wang J, Mu Q.

Bioinformatics. 2003 Sep 22;19(14):1863-4.

PMID:
14512365
4.

Parallel BLAST on split databases.

Mathog DR.

Bioinformatics. 2003 Sep 22;19(14):1865-6.

PMID:
14512366
5.

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.

6.

ProteoMix: an integrated and flexible system for interactively analyzing large numbers of protein sequences.

Chikayama E, Kurotani A, Kuroda Y, Yokoyama S.

Bioinformatics. 2004 Nov 1;20(16):2836-8. Epub 2004 Apr 22.

PMID:
15105278
7.

PfamAlyzer: domain-centric homology search.

Hollich V, Sonnhammer EL.

Bioinformatics. 2007 Dec 15;23(24):3382-3. Epub 2007 Oct 31.

PMID:
17977882
8.

Sfixem--graphical sequence feature display in Java.

Chalk AM, Wennerberg M, Sonnhammer EL.

Bioinformatics. 2004 Oct 12;20(15):2488-90. Epub 2004 Apr 15.

PMID:
15087316
9.

TandTRAQ: an open-source tool for integrated protein identification and quantitation.

Laderas T, Bystrom C, McMillen D, Fan G, McWeeney S.

Bioinformatics. 2007 Dec 15;23(24):3394-6. Epub 2007 Sep 25.

PMID:
17895273
10.

STORM towards protein function: systematic tailored ORF-data retrieval and management.

Lavigne R, Sun WD, Volckaert G.

Appl Bioinformatics. 2003;2(3):177-9.

PMID:
15130805
11.

BioParser: a tool for processing of sequence similarity analysis reports.

Catanho M, Mascarenhas D, Degrave W, de Miranda AB.

Appl Bioinformatics. 2006;5(1):49-53.

PMID:
16539538
12.

CoC: a database of universally conserved residues in protein folds.

Donald JE, Hubner IA, Rotemberg VM, Shakhnovich EI, Mirny LA.

Bioinformatics. 2005 May 15;21(10):2539-40. Epub 2005 Mar 3.

PMID:
15746286
13.

FCP: functional coverage of the proteome by structures.

GarcĂ­a-Serna R, Opatowski L, Mestres J.

Bioinformatics. 2006 Jul 15;22(14):1792-3. Epub 2006 May 16.

PMID:
16705012
14.

JXP4BIGI: a generalized, Java XML-based approach for biological information gathering and integration.

Huang Y, Ni T, Zhou L, Su S.

Bioinformatics. 2003 Dec 12;19(18):2351-8.

PMID:
14668218
15.

Capturing biological information with class-responsibility-collaboration cards.

Shegogue D, Zheng WJ.

Bioinformatics. 2005 Feb 1;21(3):415-7. Epub 2004 Sep 7.

PMID:
15353449
16.

A task framework for the web interface W2H.

Ernst P, Glatting KH, Suhai S.

Bioinformatics. 2003 Jan 22;19(2):278-82.

PMID:
12538250
17.

SignalML: metaformat for description of biomedical time series.

Durka PJ, Ircha D.

Comput Methods Programs Biomed. 2004 Dec;76(3):253-9.

PMID:
15501511
18.

Analysing gene expressions with GRANK.

de Boer WP, Oudejans JJ, Meijer CJ, Lankelma J.

Bioinformatics. 2003 Oct 12;19(15):2000-1.

PMID:
14555635
19.

XEMBL: distributing EMBL data in XML format.

Wang L, Riethoven JJ, Robinson A.

Bioinformatics. 2002 Aug;18(8):1147-8.

PMID:
12176844
20.

PSST-2.0: Protein Data Bank Sequence Search Tool.

Ananthalakshmi P, Samayamohan K, Chokalingam C, Mayilarasi C, Sekar K.

Appl Bioinformatics. 2005;4(2):141-5.

PMID:
16128616

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