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Items: 1 to 20 of 168

1.

Probabilistic inference of molecular networks from noisy data sources.

Iossifov I, Krauthammer M, Friedman C, Hatzivassiloglou V, Bader JS, White KP, Rzhetsky A.

Bioinformatics. 2004 May 22;20(8):1205-13. Epub 2004 Feb 10.

PMID:
14871876
2.

Of truth and pathways: chasing bits of information through myriads of articles.

Krauthammer M, Kra P, Iossifov I, Gomez SM, Hripcsak G, Hatzivassiloglou V, Friedman C, Rzhetsky A.

Bioinformatics. 2002;18 Suppl 1:S249-57.

PMID:
12169554
3.

Visualisation and navigation methods for typed protein-protein interaction networks.

Friedrich C, Schreiber F.

Appl Bioinformatics. 2003;2(3 Suppl):S19-24.

PMID:
15130812
4.

Selective integration of multiple biological data for supervised network inference.

Kato T, Tsuda K, Asai K.

Bioinformatics. 2005 May 15;21(10):2488-95. Epub 2005 Feb 22.

PMID:
15728114
5.

POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome.

Huang TW, Tien AC, Huang WS, Lee YC, Peng CL, Tseng HH, Kao CY, Huang CY.

Bioinformatics. 2004 Nov 22;20(17):3273-6. Epub 2004 Jun 24.

PMID:
15217821
6.

A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.

Zhang S, Liu HW, Ning XM, Zhang XS.

Int J Data Min Bioinform. 2009;3(1):68-84.

PMID:
19432377
7.

Extraction of biological interaction networks from scientific literature.

Skusa A, Rüegg A, Köhler J.

Brief Bioinform. 2005 Sep;6(3):263-76. Review.

PMID:
16212774
8.

Annotating proteins by mining protein interaction networks.

Kirac M, Ozsoyoglu G, Yang J.

Bioinformatics. 2006 Jul 15;22(14):e260-70.

PMID:
16873481
9.

Predicting protein functions with message passing algorithms.

Leone M, Pagnani A.

Bioinformatics. 2005 Jan 15;21(2):239-47. Epub 2004 Sep 17.

PMID:
15377508
10.

Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.

Li H, Li J, Wong L.

Bioinformatics. 2006 Apr 15;22(8):989-96. Epub 2006 Jan 29.

PMID:
16446278
11.

Biological units and their effect upon the properties and prediction of protein-protein interactions.

Jefferson ER, Walsh TP, Barton GJ.

J Mol Biol. 2006 Dec 15;364(5):1118-29. Epub 2006 Sep 22.

PMID:
17049359
12.

A query language for biological networks.

Leser U.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii33-9.

PMID:
16204121
13.

Bayesian methods for predicting interacting protein pairs using domain information.

Kim I, Liu Y, Zhao H.

Biometrics. 2007 Sep;63(3):824-33.

PMID:
17825014
14.

SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.

Teyra J, Doms A, Schroeder M, Pisabarro MT.

BMC Bioinformatics. 2006 Mar 2;7:104.

15.

Integrated analysis of multiple data sources reveals modular structure of biological networks.

Lu H, Shi B, Wu G, Zhang Y, Zhu X, Zhang Z, Liu C, Zhao Y, Wu T, Wang J, Chen R.

Biochem Biophys Res Commun. 2006 Jun 23;345(1):302-9. Epub 2006 Apr 27.

PMID:
16690033
16.

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service.

Kim JG, Park D, Kim BC, Cho SW, Kim YT, Park YJ, Cho HJ, Park H, Kim KB, Yoon KO, Park SJ, Lee BM, Bhak J.

BMC Bioinformatics. 2008 Jan 24;9:41. doi: 10.1186/1471-2105-9-41.

17.

hp-DPI: Helicobacter pylori database of protein interactomes--embracing experimental and inferred interactions.

Lin CY, Chen CL, Cho CS, Wang LM, Chang CM, Chen PY, Lo CZ, Hsiung CA.

Bioinformatics. 2005 Apr 1;21(7):1288-90. Epub 2004 Oct 28. Erratum in: Bioinformatics. 2005 Jun 15;21(12):2932.

PMID:
15513991
18.

Inferring strengths of protein-protein interactions from experimental data using linear programming.

Hayashida M, Ueda N, Akutsu T.

Bioinformatics. 2003 Oct;19 Suppl 2:ii58-65.

PMID:
14534173
19.

Topology of gene expression networks as revealed by data mining and modeling.

Lukashin AV, Lukashev ME, Fuchs R.

Bioinformatics. 2003 Oct 12;19(15):1909-16.

PMID:
14555623
20.

Domain-based small molecule binding site annotation.

Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW.

BMC Bioinformatics. 2006 Mar 17;7:152.

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