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Items: 1 to 20 of 216

1.

The SUPERFAMILY database in 2004: additions and improvements.

Madera M, Vogel C, Kummerfeld SK, Chothia C, Gough J.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D235-9.

3.
4.

The SUPERFAMILY database in structural genomics.

Gough J.

Acta Crystallogr D Biol Crystallogr. 2002 Nov;58(Pt 11):1897-900. Epub 2002 Oct 21. Review.

PMID:
12393919
5.

3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.

Fleming K, Müller A, MacCallum RM, Sternberg MJ.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D245-50.

6.
7.

SUPFAM: a database of sequence superfamilies of protein domains.

Pandit SB, Bhadra R, Gowri VS, Balaji S, Anand B, Srinivasan N.

BMC Bioinformatics. 2004 Mar 15;5:28.

8.

AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.

Gewehr JE, Hintermair V, Zimmer R.

Bioinformatics. 2007 May 15;23(10):1203-10. Epub 2007 Mar 22.

PMID:
17379694
9.

SCOP database in 2004: refinements integrate structure and sequence family data.

Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D226-9.

10.

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.

Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, Madera M, Chothia C, Gough J.

Nucleic Acids Res. 2009 Jan;37(Database issue):D380-6. doi: 10.1093/nar/gkn762. Epub 2008 Nov 26.

11.

The SUPERFAMILY database in 2007: families and functions.

Wilson D, Madera M, Vogel C, Chothia C, Gough J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D308-13. Epub 2006 Nov 10.

12.

Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.

13.

GenDiS: Genomic Distribution of protein structural domain Superfamilies.

Pugalenthi G, Bhaduri A, Sowdhamini R.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D252-5.

14.

The Pfam protein families database.

Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer EL.

Nucleic Acids Res. 2000 Jan 1;28(1):263-6.

15.

Accurate domain identification with structure-anchored hidden Markov models, saHMMs.

Tångrot JE, Kågström B, Sauer UH.

Proteins. 2009 Aug 1;76(2):343-52. doi: 10.1002/prot.22349.

PMID:
19173309
16.

Fast model-based protein homology detection without alignment.

Hochreiter S, Heusel M, Obermayer K.

Bioinformatics. 2007 Jul 15;23(14):1728-36. Epub 2007 May 8.

PMID:
17488755
17.

Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.

Kriventseva EV, Servant F, Apweiler R.

Nucleic Acids Res. 2003 Jan 1;31(1):388-9.

18.

SCOPEC: a database of protein catalytic domains.

George RA, Spriggs RV, Thornton JM, Al-Lazikani B, Swindells MB.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i130-6.

PMID:
15262791
19.

The SYSTERS Protein Family Database in 2005.

Meinel T, Krause A, Luz H, Vingron M, Staub E.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D226-9.

20.

Analysis of disulphide bond connectivity patterns in protein tertiary structure.

Jai Kartik V, Lavanya T, Guruprasad K.

Int J Biol Macromol. 2006 May 30;38(3-5):174-9. Epub 2006 Apr 3.

PMID:
16580722

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