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Items: 1 to 20 of 83

1.

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.

Shiraki T, Kondo S, Katayama S, Waki K, Kasukawa T, Kawaji H, Kodzius R, Watahiki A, Nakamura M, Arakawa T, Fukuda S, Sasaki D, Podhajska A, Harbers M, Kawai J, Carninci P, Hayashizaki Y.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15776-81.

2.

Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference.

de Hoon M, Hayashizaki Y.

Biotechniques. 2008 Apr;44(5):627-8, 630, 632. doi: 10.2144/000112802. Review.

3.

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.

Maeda N, Nishiyori H, Nakamura M, Kawazu C, Murata M, Sano H, Hayashida K, Fukuda S, Tagami M, Hasegawa A, Murakami K, Schroder K, Irvine K, Hume D, Hayashizaki Y, Carninci P, Suzuki H.

Biotechniques. 2008 Jul;45(1):95-7. doi: 10.2144/000112814.

4.

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

Faulkner GJ, Forrest AR, Chalk AM, Schroder K, Hayashizaki Y, Carninci P, Hume DA, Grimmond SM.

Genomics. 2008 Mar;91(3):281-8. doi: 10.1016/j.ygeno.2007.11.003.

5.

Different promoter usage for CYP19 gene expression in buffalo ovary and placenta.

Sharma D, Ghai S, Singh D.

Gen Comp Endocrinol. 2009 Jul;162(3):319-28. doi: 10.1016/j.ygcen.2009.04.009.

PMID:
19375426
7.

Identification of Sp1 and GC-boxes as transcriptional regulators of mouse Dag1 gene promoter.

Rettino A, Rafanelli F, Genovese G, Goracci M, Cifarelli RA, Cittadini A, Sgambato A.

Am J Physiol Cell Physiol. 2009 Nov;297(5):C1113-23. doi: 10.1152/ajpcell.00189.2009.

8.

Characterization of the human DYRK1A promoter and its regulation by the transcription factor E2F1.

Maenz B, Hekerman P, Vela EM, Galceran J, Becker W.

BMC Mol Biol. 2008 Mar 26;9:30. doi: 10.1186/1471-2199-9-30.

9.

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

Kawaji H, Kasukawa T, Fukuda S, Katayama S, Kai C, Kawai J, Carninci P, Hayashizaki Y.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D632-6.

10.

Transcriptional regulation of the mouse PNRC2 promoter by the nuclear factor Y (NFY) and E2F1.

Zhou D, Masri S, Ye JJ, Chen S.

Gene. 2005 Nov 21;361:89-100.

PMID:
16181749
11.

Deep cap analysis of gene expression.

Kurosawa J, Nishiyori H, Hayashizaki Y.

Methods Mol Biol. 2011;687:147-63. doi: 10.1007/978-1-60761-944-4_10.

PMID:
20967606
12.
13.

Tag-based approaches for transcriptome research and genome annotation.

Harbers M, Carninci P.

Nat Methods. 2005 Jul;2(7):495-502. Review.

PMID:
15973418
14.

Puralpha activates PDGF-A gene transcription via interactions with a G-rich, single-stranded region of the promoter.

Zhang Q, Pedigo N, Shenoy S, Khalili K, Kaetzel DM.

Gene. 2005 Mar 28;348:25-32.

PMID:
15777709
15.

Alternative usage of 5' exons in the chicken nerve growth factor gene: refined characterization of a weakly expressed gene.

Bertaux O, Toselli-Mollereau E, Auffray C, Devignes MD.

Gene. 2004 Jun 9;334:83-97.

PMID:
15256258
17.

[Cap analysis gene expression: CAGE].

Nakamura M, Carninci P.

Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2688-93. Review. Japanese. No abstract available.

PMID:
15669240
18.

Characterization of the infection-responsive bovine lactoferrin promoter.

Zheng J, Ather JL, Sonstegard TS, Kerr DE.

Gene. 2005 Jun 20;353(1):107-17.

PMID:
15935571
20.

ESE-1 is a novel transcriptional mediator of angiopoietin-1 expression in the setting of inflammation.

Brown C, Gaspar J, Pettit A, Lee R, Gu X, Wang H, Manning C, Voland C, Goldring SR, Goldring MB, Libermann TA, Gravallese EM, Oettgen P.

J Biol Chem. 2004 Mar 26;279(13):12794-803.

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