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Items: 1 to 20 of 51

1.

A probabilistic model for the extraction of expression levels from oligonucleotide arrays.

Milo M, Fazeli A, Niranjan M, Lawrence ND.

Biochem Soc Trans. 2003 Dec;31(Pt 6):1510-2.

PMID:
14641100
2.

BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data.

Hein AM, Richardson S, Causton HC, Ambler GK, Green PJ.

Biostatistics. 2005 Jul;6(3):349-73. Epub 2005 Apr 14.

3.

A comparison of Affymetrix gene expression arrays.

Robinson MD, Speed TP.

BMC Bioinformatics. 2007 Nov 15;8:449.

4.

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.

PMID:
16253343
5.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

6.
7.

A distribution free summarization method for Affymetrix GeneChip arrays.

Chen Z, McGee M, Liu Q, Scheuermann RH.

Bioinformatics. 2007 Feb 1;23(3):321-7. Epub 2006 Dec 5.

8.

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

BMC Bioinformatics. 2007 Apr 20;8:132.

9.

Methods for evaluating gene expression from Affymetrix microarray datasets.

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

BMC Bioinformatics. 2008 Jun 17;9:284. doi: 10.1186/1471-2105-9-284.

10.

Algorithm to model gene expression on Affymetrix chips without the use of MM cells.

Lauren PD.

IEEE Trans Nanobioscience. 2003 Sep;2(3):163-70.

PMID:
15376951
11.

Experimental comparison and cross-validation of Affymetrix HT plate and cartridge array gene expression platforms.

Allaire NE, Rieder LE, Bienkowska J, Carulli JP.

Genomics. 2008 Nov;92(5):359-65. doi: 10.1016/j.ygeno.2008.06.010. Epub 2008 Sep 17.

12.

Combining gene expression data from different generations of oligonucleotide arrays.

Hwang KB, Kong SW, Greenberg SA, Park PJ.

BMC Bioinformatics. 2004 Oct 25;5:159.

13.
14.

Unbiased characterization of high-density oligonucleotide microarrays using probe-level statistics.

Aimone JB, Gage FH.

J Neurosci Methods. 2004 May 30;135(1-2):27-33.

PMID:
15020086
15.

A learned comparative expression measure for affymetrix genechip DNA microarrays.

Sheffler W, Upfal E, Sedivy J, Noble WS.

Proc IEEE Comput Syst Bioinform Conf. 2005:144-54.

PMID:
16447972
16.

The chemiluminescence based Ziplex automated workstation focus array reproduces ovarian cancer Affymetrix GeneChip expression profiles.

Quinn MC, Wilson DJ, Young F, Dempsey AA, Arcand SL, Birch AH, Wojnarowicz PM, Provencher D, Mes-Masson AM, Englert D, Tonin PN.

J Transl Med. 2009 Jul 6;7:55. doi: 10.1186/1479-5876-7-55.

17.

A comparison of match-only algorithms for the analysis of Plasmodium falciparum oligonucleotide arrays.

Simpson KM, Baum J, Good RT, Winzeler EA, Cowman AF, Speed TP.

Int J Parasitol. 2005 Apr 30;35(5):523-31.

PMID:
15826644
18.

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. doi: 10.1186/1471-2164-9-529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121.

19.

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.

Xiao Y, Segal MR, Yang YH, Yeh RF.

Bioinformatics. 2007 Jun 15;23(12):1459-67. Epub 2007 Apr 25.

20.

A new summarization method for Affymetrix probe level data.

Hochreiter S, Clevert DA, Obermayer K.

Bioinformatics. 2006 Apr 15;22(8):943-9. Epub 2006 Feb 10.

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