Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 199

1.

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria.

Vogel J, Bartels V, Tang TH, Churakov G, Slagter-Jäger JG, Hüttenhofer A, Wagner EG.

Nucleic Acids Res. 2003 Nov 15;31(22):6435-43.

2.

How to find small non-coding RNAs in bacteria.

Vogel J, Sharma CM.

Biol Chem. 2005 Dec;386(12):1219-38. Review.

PMID:
16336117
3.

sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.

Livny J, Fogel MA, Davis BM, Waldor MK.

Nucleic Acids Res. 2005 Jul 26;33(13):4096-105. Print 2005.

5.

sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes.

Huang HY, Chang HY, Chou CH, Tseng CP, Ho SY, Yang CD, Ju YW, Huang HD.

Nucleic Acids Res. 2009 Jan;37(Database issue):D150-4. doi: 10.1093/nar/gkn852. Epub 2008 Nov 16.

6.

Identification of bacterial small non-coding RNAs: experimental approaches.

Altuvia S.

Curr Opin Microbiol. 2007 Jun;10(3):257-61. Epub 2007 Jun 5. Review.

PMID:
17553733
7.

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti.

Schlüter JP, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jänicke S, Becker JD, Giegerich R, Becker A.

BMC Genomics. 2010 Apr 17;11:245. doi: 10.1186/1471-2164-11-245.

8.

Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species.

González N, Heeb S, Valverde C, Kay E, Reimmann C, Junier T, Haas D.

BMC Genomics. 2008 Apr 13;9:167. doi: 10.1186/1471-2164-9-167.

9.

Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools.

Sonnleitner E, Sorger-Domenigg T, Madej MJ, Findeiss S, Hackermüller J, Hüttenhofer A, Stadler PF, Bläsi U, Moll I.

Microbiology. 2008 Oct;154(Pt 10):3175-87. doi: 10.1099/mic.0.2008/019703-0.

PMID:
18832323
10.

Experimental approaches for the discovery and characterization of regulatory small RNA.

Sharma CM, Vogel J.

Curr Opin Microbiol. 2009 Oct;12(5):536-46. doi: 10.1016/j.mib.2009.07.006. Epub 2009 Sep 14. Review.

PMID:
19758836
11.

CsrA interacting small RNAs in Haemophilus spp genomes: a theoretical analysis.

Sridhar J, Sekar K, Rafi ZA.

Arch Microbiol. 2009 May;191(5):451-9. doi: 10.1007/s00203-009-0474-y. Epub 2009 Apr 7.

PMID:
19350225
12.

Identification of small noncoding RNAs in Helicobacter pylori by a bioinformatics-based approach.

Xiao B, Li W, Guo G, Li B, Liu Z, Jia K, Guo Y, Mao X, Zou Q.

Curr Microbiol. 2009 Mar;58(3):258-63. doi: 10.1007/s00284-008-9318-2. Epub 2009 Jan 3.

PMID:
19123032
13.

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence.

Padalon-Brauch G, Hershberg R, Elgrably-Weiss M, Baruch K, Rosenshine I, Margalit H, Altuvia S.

Nucleic Acids Res. 2008 Apr;36(6):1913-27. doi: 10.1093/nar/gkn050. Epub 2008 Feb 11.

14.

sRNAscanner: a computational tool for intergenic small RNA detection in bacterial genomes.

Sridhar J, Sambaturu N, Sabarinathan R, Ou HY, Deng Z, Sekar K, Rafi ZA, Rajakumar K.

PLoS One. 2010 Aug 5;5(8):e11970. doi: 10.1371/journal.pone.0011970. Erratum in: PLoS One. 2010;5(9). doi: 10.1371/annotation/71408e55-e1d3-4950-9c3b-d3a3ad66a1ff. Narmada, Suryanarayanan Ramkumar [corrected to Sambaturu, Narmada].

15.

Turn-over of the small non-coding RNA RprA in E. coli is influenced by osmolarity.

Madhugiri R, Basineni SR, Klug G.

Mol Genet Genomics. 2010 Oct;284(4):307-18. doi: 10.1007/s00438-010-0568-x. Epub 2010 Aug 18.

PMID:
20717695
16.

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli.

Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, Altuvia S.

Curr Biol. 2001 Jun 26;11(12):941-50.

17.

Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli.

Kawano M, Reynolds AA, Miranda-Rios J, Storz G.

Nucleic Acids Res. 2005 Feb 17;33(3):1040-50. Print 2005.

18.

Small RNAs of the halophilic archaeon Haloferax volcanii.

Soppa J, Straub J, Brenneis M, Jellen-Ritter A, Heyer R, Fischer S, Granzow M, Voss B, Hess WR, Tjaden B, Marchfelder A.

Biochem Soc Trans. 2009 Feb;37(Pt 1):133-6. doi: 10.1042/BST0370133.

PMID:
19143617
19.

A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome.

Chen S, Lesnik EA, Hall TA, Sampath R, Griffey RH, Ecker DJ, Blyn LB.

Biosystems. 2002 Mar-May;65(2-3):157-77.

PMID:
12069726
20.

Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homolog.

Willkomm DK, Minnerup J, Hüttenhofer A, Hartmann RK.

Nucleic Acids Res. 2005 Apr 6;33(6):1949-60. Print 2005.

Supplemental Content

Support Center