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Recent segmental and gene duplications in the mouse genome.

Cheung J, Wilson MD, Zhang J, Khaja R, MacDonald JR, Heng HH, Koop BF, Scherer SW.

Genome Biol. 2003;4(8):R47. Epub 2003 Jul 9.


Recent segmental duplications in the working draft assembly of the brown Norway rat.

Tuzun E, Bailey JA, Eichler EE.

Genome Res. 2004 Apr;14(4):493-506.


Genome-wide detection of segmental duplications and potential assembly errors in the human genome sequence.

Cheung J, Estivill X, Khaja R, MacDonald JR, Lau K, Tsui LC, Scherer SW.

Genome Biol. 2003;4(4):R25. Epub 2003 Mar 17.


Segmental duplications: organization and impact within the current human genome project assembly.

Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.

Genome Res. 2001 Jun;11(6):1005-17.


Analysis of segmental duplications and genome assembly in the mouse.

Bailey JA, Church DM, Ventura M, Rocchi M, Eichler EE.

Genome Res. 2004 May;14(5):789-801.


Analysis of recent segmental duplications in the bovine genome.

Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, Zhu B, Li C, Song J, Eichler EE.

BMC Genomics. 2009 Dec 1;10:571. doi: 10.1186/1471-2164-10-571.


Human-specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22.

Bailey JA, Yavor AM, Viggiano L, Misceo D, Horvath JE, Archidiacono N, Schwartz S, Rocchi M, Eichler EE.

Am J Hum Genet. 2002 Jan;70(1):83-100. Epub 2001 Nov 30.


Shotgun sequence assembly and recent segmental duplications within the human genome.

She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE.

Nature. 2004 Oct 21;431(7011):927-30.


Segmental duplication density decrease with distance to human-mouse breaks of synteny.

Sainz J, Rovensky P, Gudjonsson SA, Thorleifsson G, Stefansson K, Gulcher JR.

Eur J Hum Genet. 2006 Feb;14(2):216-21.


Patterns of segmental duplication in the human genome.

Zhang L, Lu HH, Chung WY, Yang J, Li WH.

Mol Biol Evol. 2005 Jan;22(1):135-41. Epub 2004 Sep 15.


Lineage-specific biology revealed by a finished genome assembly of the mouse.

Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z, Marques AC, Graves T, Zhou S, Teague B, Potamousis K, Churas C, Place M, Herschleb J, Runnheim R, Forrest D, Amos-Landgraf J, Schwartz DC, Cheng Z, Lindblad-Toh K, Eichler EE, Ponting CP; Mouse Genome Sequencing Consortium.

PLoS Biol. 2009 May 5;7(5):e1000112. doi: 10.1371/journal.pbio.1000112. Epub 2009 May 26.


Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements.

Armengol L, Pujana MA, Cheung J, Scherer SW, Estivill X.

Hum Mol Genet. 2003 Sep 1;12(17):2201-8. Epub 2003 Jul 8.


Complex evolution of 7E olfactory receptor genes in segmental duplications.

Newman T, Trask BJ.

Genome Res. 2003 May;13(5):781-93. Erratum in: Genome Res. 2006 Apr;16(4):557.


Computational comparison of two mouse draft genomes and the human golden path.

Xuan Z, Wang J, Zhang MQ.

Genome Biol. 2003;4(1):R1. Epub 2002 Dec 5.


Recent segmental duplications in the human genome.

Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE.

Science. 2002 Aug 9;297(5583):1003-7.


Association of microsatellite pairs with segmental duplications in insect genomes.

Behura SK, Severson DW.

BMC Genomics. 2013 Dec 21;14:907. doi: 10.1186/1471-2164-14-907.


Segmental duplications in the human genome reveal details of pseudogene formation.

Khurana E, Lam HY, Cheng C, Carriero N, Cayting P, Gerstein MB.

Nucleic Acids Res. 2010 Nov;38(20):6997-7007. doi: 10.1093/nar/gkq587. Epub 2010 Jul 8.


Molecular evidence for asymmetric evolution of sister duplicated blocks after cereal polyploidy.

Wang H, Yu L, Lai F, Liu L, Wang J.

Plant Mol Biol. 2005 Sep;59(1):63-74.

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