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Items: 1 to 20 of 85

1.

Toward computer-based cleavage site prediction of cysteine endopeptidases.

Lohmüller T, Wenzler D, Hagemann S, Kiess W, Peters C, Dandekar T, Reinheckel T.

Biol Chem. 2003 Jun;384(6):899-909. Review.

PMID:
12887057
2.

CaSPredictor: a new computer-based tool for caspase substrate prediction.

Garay-Malpartida HM, Occhiucci JM, Alves J, Belizário JE.

Bioinformatics. 2005 Jun;21 Suppl 1:i169-76.

PMID:
15961454
3.

GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences.

Backes C, Kuentzer J, Lenhof HP, Comtesse N, Meese E.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W208-13.

4.

Proteomic identification of protease cleavage sites characterizes prime and non-prime specificity of cysteine cathepsins B, L, and S.

Biniossek ML, Nägler DK, Becker-Pauly C, Schilling O.

J Proteome Res. 2011 Dec 2;10(12):5363-73. doi: 10.1021/pr200621z. Epub 2011 Oct 26. Erratum in: J Proteome Res. 2011 Dec 2;10(12):5577.

PMID:
21967108
5.

Cascleave: towards more accurate prediction of caspase substrate cleavage sites.

Song J, Tan H, Shen H, Mahmood K, Boyd SE, Webb GI, Akutsu T, Whisstock JC.

Bioinformatics. 2010 Mar 15;26(6):752-60. doi: 10.1093/bioinformatics/btq043. Epub 2010 Feb 3.

PMID:
20130033
7.

Proteomics and phylogenetic analysis of the cathepsin L protease family of the helminth pathogen Fasciola hepatica: expansion of a repertoire of virulence-associated factors.

Robinson MW, Tort JF, Lowther J, Donnelly SM, Wong E, Xu W, Stack CM, Padula M, Herbert B, Dalton JP.

Mol Cell Proteomics. 2008 Jun;7(6):1111-23. doi: 10.1074/mcp.M700560-MCP200. Epub 2008 Feb 21.

8.

Involvement of cathepsin B- and L-like proteinases in silk gland histolysis during metamorphosis of Bombyx mori.

Shiba H, Uchida D, Kobayashi H, Natori M.

Arch Biochem Biophys. 2001 Jun 1;390(1):28-34.

PMID:
11368511
9.

Developing a powerful in silico tool for the discovery of novel caspase-3 substrates: a preliminary screening of the human proteome.

Ayyash M, Tamimi H, Ashhab Y.

BMC Bioinformatics. 2012 Jan 23;13:14. doi: 10.1186/1471-2105-13-14.

10.

Identification and discrimination of extracellularly active cathepsins B and L in high-invasive melanoma cells.

Klose A, Zigrino P, Dennhöfer R, Mauch C, Hunzelmann N.

Anal Biochem. 2006 Jun 1;353(1):57-62. Epub 2006 Feb 9.

PMID:
16620747
11.

Action of rat liver cathepsin L on glucagon.

Kärgel HJ, Dettmer R, Etzold G, Kirschke H, Bohley P, Langner J.

Acta Biol Med Ger. 1981;40(9):1139-43.

PMID:
7340337
12.

Recombinant human cathepsin X is a carboxymonopeptidase only: a comparison with cathepsins B and L.

Puzer L, Cotrin SS, Cezari MH, Hirata IY, Juliano MA, Stefe I, Turk D, Turk B, Juliano L, Carmona AK.

Biol Chem. 2005 Nov;386(11):1191-5.

PMID:
16307485
14.

Pripper: prediction of caspase cleavage sites from whole proteomes.

Piippo M, Lietzén N, Nevalainen OS, Salmi J, Nyman TA.

BMC Bioinformatics. 2010 Jun 15;11:320. doi: 10.1186/1471-2105-11-320.

15.

Contribution of cathepsin L to secretome composition and cleavage pattern of mouse embryonic fibroblasts.

Tholen S, Biniossek ML, Gessler AL, Müller S, Weisser J, Kizhakkedathu JN, Reinheckel T, Schilling O.

Biol Chem. 2011 Nov;392(11):961-71. doi: 10.1515/BC.2011.162.

PMID:
21972973
16.

Sensitization to the lysosomal cell death pathway upon immortalization and transformation.

Fehrenbacher N, Gyrd-Hansen M, Poulsen B, Felbor U, Kallunki T, Boes M, Weber E, Leist M, Jäättelä M.

Cancer Res. 2004 Aug 1;64(15):5301-10.

17.

Long-term cyclosporin A exposure suppresses cathepsin-B and -L activity in gingival fibroblasts.

Yamaguchi M, Naruishi K, Yamada-Naruishi H, Omori K, Nishimura F, Takashiba S.

J Periodontal Res. 2004 Oct;39(5):320-6.

PMID:
15324353
18.

Cysteine cathepsins are central contributors of invasion by cultured adenosylmethionine decarboxylase-transformed rodent fibroblasts.

Ravanko K, Järvinen K, Helin J, Kalkkinen N, Hölttä E.

Cancer Res. 2004 Dec 15;64(24):8831-8.

19.

Cathepsin V, but not cathepsins L, B and K, may release angiostatin-like fragments from plasminogen.

Puzer L, Barros NM, Paschoalin T, Hirata IY, Tanaka AS, Oliveira MC, Brömme D, Carmona AK.

Biol Chem. 2008 Feb;389(2):195-200. doi: 10.1515/BC.2008.020.

PMID:
18163891
20.

An activity-based probe for the determination of cysteine cathepsin protease activities in whole cells.

Falgueyret JP, Black WC, Cromlish W, Desmarais S, Lamontagne S, Mellon C, Riendeau D, Rodan S, Tawa P, Wesolowski G, Bass KE, Venkatraman S, Percival MD.

Anal Biochem. 2004 Dec 15;335(2):218-27. Erratum in: Anal Biochem. 2005 May 15;340(2):380.

PMID:
15556560

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