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Items: 1 to 20 of 124

1.

Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii.

Brachat S, Dietrich FS, Voegeli S, Zhang Z, Stuart L, Lerch A, Gates K, Gaffney T, Philippsen P.

Genome Biol. 2003;4(7):R45. Epub 2003 Jun 25.

2.

The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome.

Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, Mohr C, Pöhlmann R, Luedi P, Choi S, Wing RA, Flavier A, Gaffney TD, Philippsen P.

Science. 2004 Apr 9;304(5668):304-7. Epub 2004 Mar 4.

4.

Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.

Gattiker A, Rischatsch R, Demougin P, Voegeli S, Dietrich FS, Philippsen P, Primig M.

BMC Genomics. 2007 Jan 9;8:9.

5.

The Ashbya Genome Database (AGD)--a tool for the yeast community and genome biologists.

Hermida L, Brachat S, Voegeli S, Philippsen P, Primig M.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D348-52.

6.

Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis.

Gomes D, Aguiar TQ, Dias O, Ferreira EC, Domingues L, Rocha I.

BMC Genomics. 2014 Sep 24;15:810. doi: 10.1186/1471-2164-15-810.

7.

Genomes of Ashbya fungi isolated from insects reveal four mating-type loci, numerous translocations, lack of transposons, and distinct gene duplications.

Dietrich FS, Voegeli S, Kuo S, Philippsen P.

G3 (Bethesda). 2013 Aug 7;3(8):1225-39. doi: 10.1534/g3.112.002881.

8.
9.

Homologues of yeast polarity genes control the development of multinucleated hyphae in Ashbya gossypii.

Philippsen P, Kaufmann A, Schmitz HP.

Curr Opin Microbiol. 2005 Aug;8(4):370-7. Review.

PMID:
16023404
10.
11.

Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae.

Hall C, Brachat S, Dietrich FS.

Eukaryot Cell. 2005 Jun;4(6):1102-15.

12.

PCR-based gene targeting in the filamentous fungus Ashbya gossypii.

Wendland J, Ayad-Durieux Y, Knechtle P, Rebischung C, Philippsen P.

Gene. 2000 Jan 25;242(1-2):381-91.

PMID:
10721732
13.

Ashbya gossypii: a model for fungal developmental biology.

Wendland J, Walther A.

Nat Rev Microbiol. 2005 May;3(5):421-9. Review.

PMID:
15821727
14.

Saccharomyces cerevisiae: gene annotation and genome variability, state of the art through comparative genomics.

Louis E.

Methods Mol Biol. 2011;759:31-40. doi: 10.1007/978-1-61779-173-4_2.

PMID:
21863479
15.

Re-annotation of protein-coding genes in the genome of saccharomyces cerevisiae based on support vector machines.

Lin D, Yin X, Wang X, Zhou P, Guo FB.

PLoS One. 2013 Jul 10;8(7):e64477. doi: 10.1371/journal.pone.0064477. Print 2013.

16.

Regions of microsynteny in Magnaporthe grisea and Neurospora crassa.

Hamer L, Pan H, Adachi K, Orbach MJ, Page A, Ramamurthy L, Woessner JP.

Fungal Genet Biol. 2001 Jul;33(2):137-43.

PMID:
11456466
17.

Revisiting the Saccharomyces cerevisiae predicted ORFeome.

Li QR, Carvunis AR, Yu H, Han JD, Zhong Q, Simonis N, Tam S, Hao T, Klitgord NJ, Dupuy D, Mou D, Wapinski I, Regev A, Hill DE, Cusick ME, Vidal M.

Genome Res. 2008 Aug;18(8):1294-303. doi: 10.1101/gr.076661.108. Epub 2008 May 23.

18.

A large-scale full-length cDNA analysis to explore the budding yeast transcriptome.

Miura F, Kawaguchi N, Sese J, Toyoda A, Hattori M, Morishita S, Ito T.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17846-51. Epub 2006 Nov 13.

19.

Characterization of α-factor pheromone and pheromone receptor genes of Ashbya gossypii.

Wendland J, Dünkler A, Walther A.

FEMS Yeast Res. 2011 Aug;11(5):418-29. doi: 10.1111/j.1567-1364.2011.00732.x. Epub 2011 May 6.

20.

A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach.

Proux-Wéra E, Armisén D, Byrne KP, Wolfe KH.

BMC Bioinformatics. 2012 Sep 17;13:237. doi: 10.1186/1471-2105-13-237.

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