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Items: 1 to 20 of 130

1.

Refined annotation of the Arabidopsis genome by complete expressed sequence tag mapping.

Zhu W, Schlueter SD, Brendel V.

Plant Physiol. 2003 Jun;132(2):469-84.

2.

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.

PMID:
14764557
3.

GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.

Schlueter SD, Dong Q, Brendel V.

Nucleic Acids Res. 2003 Jul 1;31(13):3597-600.

5.

Comparative plant genomics resources at PlantGDB.

Dong Q, Lawrence CJ, Schlueter SD, Wilkerson MD, Kurtz S, Lushbough C, Brendel V.

Plant Physiol. 2005 Oct;139(2):610-8.

7.

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.

Picardi E, Mignone F, Pesole G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S10. doi: 10.1186/1471-2105-10-S6-S10.

8.

SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein.

Krause A, Haas SA, Coward E, Vingron M.

Nucleic Acids Res. 2002 Jan 1;30(1):299-300.

9.
10.

Detection and prediction of alternative splicing in Arabidopsis thaliana.

Park M, Falcone DL, Daniels KM.

Int J Comput Biol Drug Des. 2008;1(1):39-58.

PMID:
20055000
11.

PlantGDB, plant genome database and analysis tools.

Dong Q, Schlueter SD, Brendel V.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D354-9.

12.

GMAP: a genomic mapping and alignment program for mRNA and EST sequences.

Wu TD, Watanabe CK.

Bioinformatics. 2005 May 1;21(9):1859-75. Epub 2005 Feb 22.

PMID:
15728110
13.

Comparative analysis of the Arabidopsis and rice expressed sequence tag (EST) sets.

Ewing R, Poirot O, Claverie JM.

In Silico Biol. 1999-2000;1(4):197-213.

PMID:
11479934
14.

Optimal spliced alignment of homologous cDNA to a genomic DNA template.

Usuka J, Zhu W, Brendel V.

Bioinformatics. 2000 Mar;16(3):203-11.

PMID:
10869013
15.

Efficient clustering of large EST data sets on parallel computers.

Kalyanaraman A, Aluru S, Kothari S, Brendel V.

Nucleic Acids Res. 2003 Jun 1;31(11):2963-74.

17.

Analysis of expressed sequence tags from Brassica rapa L. ssp. pekinensis.

Lim JY, Shin CS, Chung EJ, Kim JS, Kim HU, Oh SJ, Choi WB, Ryou CS, Kim JB, Kwon MS, Chung TY, Song SI, Kim JK, Nahm BH, Hwang YS, Eun MY, Lee JS, Cheong JJ, Choi YD.

Mol Cells. 2000 Aug 31;10(4):399-404.

18.

The construction of Arabidopsis expressed sequence tag assemblies. A new resource to facilitate gene identification.

Rounsley SD, Glodek A, Sutton G, Adams MD, Somerville CR, Venter JC, Kerlavage AR.

Plant Physiol. 1996 Nov;112(3):1177-83.

19.

Evaluation of EST-data using the genome assembly.

Murray CG, Larsson TP, Hill T, Björklind R, Fredriksson R, Schiöth HB.

Biochem Biophys Res Commun. 2005 Jun 17;331(4):1566-76.

PMID:
15883052
20.

ESTMAP: a system for expressed sequence tags mapping on genomic sequences.

Milanesi L, Rogozin IB.

IEEE Trans Nanobioscience. 2003 Jun;2(2):75-8.

PMID:
15382662

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