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Items: 1 to 20 of 64

1.

Minimum description length block finder, a method to identify haplotype blocks and to compare the strength of block boundaries.

Mannila H, Koivisto M, Perola M, Varilo T, Hennah W, Ekelund J, Lukk M, Peltonen L, Ukkonen E.

Am J Hum Genet. 2003 Jul;73(1):86-94. Epub 2003 May 20. Retraction in: Warren S. Am J Hum Genet. 2003 Aug;73(2):444.

2.

An MDL method for finding haplotype blocks and for estimating the strength of haplotype block boundaries.

Koivisto M, Perola M, Varilo T, Hennah W, Ekelund J, Lukk M, Peltonen L, Ukkonen E, Mannila H.

Pac Symp Biocomput. 2003:502-13.

3.
4.

Finding haplotype block boundaries by using the minimum-description-length principle.

Anderson EC, Novembre J.

Am J Hum Genet. 2003 Aug;73(2):336-54. Epub 2003 Jul 11.

5.

Haplotype block structures show significant variation among populations.

Liu N, Sawyer SL, Mukherjee N, Pakstis AJ, Kidd JR, Kidd KK, Brookes AJ, Zhao H.

Genet Epidemiol. 2004 Dec;27(4):385-400.

PMID:
15389924
6.

Inference of missing SNPs and information quantity measurements for haplotype blocks.

Su SC, Kuo CC, Chen T.

Bioinformatics. 2005 May 1;21(9):2001-7. Epub 2005 Feb 4.

PMID:
15699029
7.

Haplotype inference using a Bayesian Hidden Markov model.

Sun S, Greenwood CM, Neal RM.

Genet Epidemiol. 2007 Dec;31(8):937-48.

PMID:
17630649
8.

Genomic haplotype blocks may not accurately reflect spatial variation in historic recombination intensity.

Verhoeven KJ, Simonsen KL.

Mol Biol Evol. 2005 Mar;22(3):735-40. Epub 2004 Nov 24. Erratum in: Mol Biol Evol. 2005 Apr;22(4):1160.

PMID:
15563716
9.

Population-genetic basis of haplotype blocks in the 5q31 region.

Anderson EC, Slatkin M.

Am J Hum Genet. 2004 Jan;74(1):40-9. Epub 2003 Dec 17.

10.

Efficient inference of haplotypes from genotypes on a pedigree.

Li J, Jiang T.

J Bioinform Comput Biol. 2003 Apr;1(1):41-69.

PMID:
15290781
11.

Sequential haplotype scan methods for association analysis.

Yu Z, Schaid DJ.

Genet Epidemiol. 2007 Sep;31(6):553-64.

PMID:
17487883
12.

Disease association tests by inferring ancestral haplotypes using a hidden markov model.

Su SY, Balding DJ, Coin LJ.

Bioinformatics. 2008 Apr 1;24(7):972-8. doi: 10.1093/bioinformatics/btn071. Epub 2008 Feb 23.

PMID:
18296746
13.

The effect of haplotype-block definitions on inference of haplotype-block structure and htSNPs selection.

Ding K, Zhou K, Zhang J, Knight J, Zhang X, Shen Y.

Mol Biol Evol. 2005 Jan;22(1):148-59. Epub 2004 Sep 15.

PMID:
15371531
14.

A statistical framework for haplotype block inference.

Yuan A, Chen G, Rotimi C, Bonney GE.

J Bioinform Comput Biol. 2005 Oct;3(5):1021-38.

PMID:
16278945
15.

Relaxing haplotype block models for association testing.

Castellana N, Dhamdhere K, Sridhar S, Schwartz R.

Pac Symp Biocomput. 2006:454-66.

16.

Human haplotype block sizes are negatively correlated with recombination rates.

Greenwood TA, Rana BK, Schork NJ.

Genome Res. 2004 Jul;14(7):1358-61.

17.

Genetic variations and haplotype structures of the ABCB1 gene in a Japanese population: an expanded haplotype block covering the distal promoter region, and associated ethnic differences.

Sai K, Itoda M, Saito Y, Kurose K, Katori N, Kaniwa N, Komamura K, Kotake T, Morishita H, Tomoike H, Kamakura S, Kitakaze M, Tamura T, Yamamoto N, Kunitoh H, Yamada Y, Ohe Y, Shimada Y, Shirao K, Minami H, Ohtsu A, Yoshida T, Saijo N, Kamatani N, Ozawa S, Sawada J.

Ann Hum Genet. 2006 Sep;70(Pt 5):605-22.

18.

Defining haplotype blocks and tag single-nucleotide polymorphisms in the human genome.

Schulze TG, Zhang K, Chen YS, Akula N, Sun F, McMahon FJ.

Hum Mol Genet. 2004 Feb 1;13(3):335-42. Epub 2003 Dec 17.

PMID:
14681300
19.

[Construction of haplotype and haplotype block based on tag single nucleotide polymorphisms and their applications in association studies].

Gu ML, Chu JY.

Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2007 Dec;24(6):660-5. Review. Chinese.

PMID:
18067078
20.

Prediction of single-cross hybrid performance in maize using haplotype blocks associated with QTL for grain yield.

Schrag TA, Maurer HP, Melchinger AE, Piepho HP, Peleman J, Frisch M.

Theor Appl Genet. 2007 May;114(8):1345-55. Epub 2007 Feb 24.

PMID:
17323040

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