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Items: 1 to 20 of 39

1.

Discovery of novel transcription control relationships with gene regulatory networks generated from multiple-disruption full genome expression libraries.

Aburatani S, Tashiro K, Savoie CJ, Nishizawa M, Hayashi K, Ito Y, Muta S, Yamamoto K, Ogawa M, Enomoto A, Masaki M, Watanabe S, Maki Y, Takahashi Y, Eguchi Y, Sakaki Y, Kuhara S.

DNA Res. 2003 Feb 28;10(1):1-8. Erratum in: DNA Res. 2003 Apr 30;10(2):following page 84.

PMID:
12693549
3.

Use of gene networks from full genome microarray libraries to identify functionally relevant drug-affected genes and gene regulation cascades.

Savoie CJ, Aburatani S, Watanabe S, Eguchi Y, Muta S, Imoto S, Miyano S, Kuhara S, Tashiro K.

DNA Res. 2003 Feb 28;10(1):19-25. Erratum in: DNA Res. 2003 Apr 30;10(2):following pg. 84.

PMID:
12693551
4.

Chromatin remodeling as a guide to transcriptional regulatory networks in mammals.

Urnov FD.

J Cell Biochem. 2003 Mar 1;88(4):684-94. Review.

PMID:
12577302
5.

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

6.

Statistical methods in integrative analysis for gene regulatory modules.

Zeng L, Wu J, Xie J.

Stat Appl Genet Mol Biol. 2008;7(1):Article 28. doi: 10.2202/1544-6115.1369. Epub 2008 Oct 10.

PMID:
18976224
7.

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

Chen HC, Lee HC, Lin TY, Li WH, Chen BS.

Bioinformatics. 2004 Aug 12;20(12):1914-27. Epub 2004 Mar 25.

PMID:
15044243
8.

Computational and experimental approaches for modeling gene regulatory networks.

Goutsias J, Lee NH.

Curr Pharm Des. 2007;13(14):1415-36. Review.

PMID:
17504165
9.

Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data.

Qian J, Lin J, Luscombe NM, Yu H, Gerstein M.

Bioinformatics. 2003 Oct 12;19(15):1917-26.

PMID:
14555624
10.
11.

Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.

Segal E, Yelensky R, Koller D.

Bioinformatics. 2003;19 Suppl 1:i273-82.

PMID:
12855470
12.

A predictive model of the oxygen and heme regulatory network in yeast.

Kundaje A, Xin X, Lan C, Lianoglou S, Zhou M, Zhang L, Leslie C.

PLoS Comput Biol. 2008 Nov;4(11):e1000224. doi: 10.1371/journal.pcbi.1000224. Epub 2008 Nov 14.

13.

Genome-wide partial correlation analysis of Escherichia coli microarray data.

Veiga DF, Vicente FF, Grivet M, de la Fuente A, Vasconcelos AT.

Genet Mol Res. 2007 Oct 5;6(4):730-42.

14.

Genome-wide location analysis: insights on transcriptional regulation.

Hawkins RD, Ren B.

Hum Mol Genet. 2006 Apr 15;15 Spec No 1:R1-7. Review.

PMID:
16651365
15.

Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations.

Zare H, Sangurdekar D, Srivastava P, Kaveh M, Khodursky A.

BMC Syst Biol. 2009 Apr 14;3:39. doi: 10.1186/1752-0509-3-39.

16.

Genome-wide analysis of factors regulating gene expression in liver.

Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.

Gene. 2007 Mar 15;389(2):114-21. Epub 2006 Nov 7.

PMID:
17174484
17.

Computational modelling of genome-wide [corrected] transcription assembly networks using a fluidics analogy.

Azmy YY, Gupta A, Pugh BF.

PLoS One. 2008 Aug 28;3(8):e3095. doi: 10.1371/journal.pone.0003095. Erratum in: PLoS ONE. 2008;3(9). doi: 10.1371/annotation/aadfff4b-6947-475c-8121-225ba113adf8.

18.

Adaptively inferring human transcriptional subnetworks.

Das D, Nahlé Z, Zhang MQ.

Mol Syst Biol. 2006;2:2006.0029. Epub 2006 Jun 6.

19.
20.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

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