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Items: 1 to 20 of 160

1.

Phylogeny estimation: traditional and Bayesian approaches.

Holder M, Lewis PO.

Nat Rev Genet. 2003 Apr;4(4):275-84. Review.

PMID:
12671658
2.

Phylogenetic MCMC algorithms are misleading on mixtures of trees.

Mossel E, Vigoda E.

Science. 2005 Sep 30;309(5744):2207-9.

3.

Detecting correlation between characters in a comparative analysis with uncertain phylogeny.

Huelsenbeck JP, Rannala B.

Evolution. 2003 Jun;57(6):1237-47.

PMID:
12894932
4.

Bayesian inference of phylogeny and its impact on evolutionary biology.

Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP.

Science. 2001 Dec 14;294(5550):2310-4.

PMID:
11743192
6.

Empirical and hierarchical Bayesian estimation of ancestral states.

Huelsenbeck JP, Bollback JP.

Syst Biol. 2001 Jun;50(3):351-66.

PMID:
12116580
8.

An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference.

Miller RE, Buckley TR, Manos PS.

Syst Biol. 2002 Oct;51(5):740-53.

PMID:
12396588
10.

Potential applications and pitfalls of Bayesian inference of phylogeny.

Huelsenbeck JP, Larget B, Miller RE, Ronquist F.

Syst Biol. 2002 Oct;51(5):673-88. Review.

PMID:
12396583
12.

Identifiability of parameters in MCMC Bayesian inference of phylogeny.

Rannala B.

Syst Biol. 2002 Oct;51(5):754-60.

PMID:
12396589
13.

Exploring fast computational strategies for probabilistic phylogenetic analysis.

Rodrigue N, Philippe H, Lartillot N.

Syst Biol. 2007 Oct;56(5):711-26.

PMID:
17849326
14.
15.

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous.

Kolaczkowski B, Thornton JW.

Nature. 2004 Oct 21;431(7011):980-4.

PMID:
15496922
17.

Bayesian and maximum likelihood estimation of genetic maps.

York TL, Durrett RT, Tanksley S, Nielsen R.

Genet Res. 2005 Apr;85(2):159-68.

PMID:
16174334
18.

Bayesian phylogeny analysis via stochastic approximation Monte Carlo.

Cheon S, Liang F.

Mol Phylogenet Evol. 2009 Nov;53(2):394-403. doi: 10.1016/j.ympev.2009.06.019.

PMID:
19589389
19.

Data cloning: easy maximum likelihood estimation for complex ecological models using Bayesian Markov chain Monte Carlo methods.

Lele SR, Dennis B, Lutscher F.

Ecol Lett. 2007 Jul;10(7):551-63. Erratum in: Ecol Lett. 2007 Sep;10(9):866.

PMID:
17542934
20.

Divergence time and evolutionary rate estimation with multilocus data.

Thorne JL, Kishino H.

Syst Biol. 2002 Oct;51(5):689-702.

PMID:
12396584
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