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Items: 1 to 20 of 154

1.

Summaries of Affymetrix GeneChip probe level data.

Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP.

Nucleic Acids Res. 2003 Feb 15;31(4):e15.

2.

Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP.

Biostatistics. 2003 Apr;4(2):249-64.

3.

A benchmark for Affymetrix GeneChip expression measures.

Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP.

Bioinformatics. 2004 Feb 12;20(3):323-31.

PMID:
14960458
4.

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

BMC Bioinformatics. 2007 Apr 20;8:132.

5.

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

Sásik R, Calvo E, Corbeil J.

Bioinformatics. 2002 Dec;18(12):1633-40.

PMID:
12490448
6.

Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.

Mecham BH, Klus GT, Strovel J, Augustus M, Byrne D, Bozso P, Wetmore DZ, Mariani TJ, Kohane IS, Szallasi Z.

Nucleic Acids Res. 2004 May 25;32(9):e74.

7.

A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.

Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.

Theor Biol Med Model. 2006 Apr 7;3:19.

8.

Alternative mapping of probes to genes for Affymetrix chips.

Gautier L, Møller M, Friis-Hansen L, Knudsen S.

BMC Bioinformatics. 2004 Aug 14;5:111.

9.

Comparison of the predictive accuracy of DNA array-based multigene classifiers across cDNA arrays and Affymetrix GeneChips.

Stec J, Wang J, Coombes K, Ayers M, Hoersch S, Gold DL, Ross JS, Hess KR, Tirrell S, Linette G, Hortobagyi GN, Fraser Symmans W, Pusztai L.

J Mol Diagn. 2005 Aug;7(3):357-67.

10.

Expression profiling using affymetrix genechip probe arrays.

Schinke-Braun M, Couget JA.

Methods Mol Biol. 2007;366:13-40.

PMID:
17568117
11.

CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.

Kong SW, Hwang KB, Kim RD, Zhang BT, Greenberg SA, Kohane IS, Park PJ.

Bioinformatics. 2005 May 1;21(9):2116-7.

12.

Combining gene expression data from different generations of oligonucleotide arrays.

Hwang KB, Kong SW, Greenberg SA, Park PJ.

BMC Bioinformatics. 2004 Oct 25;5:159.

13.

Stochastic models inspired by hybridization theory for short oligonucleotide arrays.

Wu Z, Irizarry RA.

J Comput Biol. 2005 Jul-Aug;12(6):882-93.

PMID:
16108723
14.

Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates.

Chen DT, Chen JJ, Soong SJ.

Bioinformatics. 2005 Jun 15;21(12):2861-6.

PMID:
15814562
15.

Alternative mRNA polyadenylation can potentially affect detection of gene expression by affymetrix genechip arrays.

D'mello V, Lee JY, MacDonald CC, Tian B.

Appl Bioinformatics. 2006;5(4):249-53.

PMID:
17140271
17.
18.

puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis.

Liu X, Gao Z, Zhang L, Rattray M.

BMC Bioinformatics. 2013 Feb 5;14:39. doi: 10.1186/1471-2105-14-39.

19.

Reproducibility of alternative probe synthesis approaches for gene expression profiling with arrays.

Vernon SD, Unger ER, Rajeevan M, Dimulescu IM, Nisenbaum R, Campbell CE.

J Mol Diagn. 2000 Aug;2(3):124-7.

20.

SUM: a new way to incorporate mismatch probe measurements.

Huang S, Wang Y, Chen P, Qian HR, Yeo A, Bemis K.

Genomics. 2004 Oct;84(4):767-77.

PMID:
15475255
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