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Items: 1 to 20 of 101

1.

Functional genomics of intracellular peptide recognition domains with combinatorial biology methods.

Sidhu SS, Bader GD, Boone C.

Curr Opin Chem Biol. 2003 Feb;7(1):97-102. Review.

PMID:
12547433
2.

Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides.

Wiedemann U, Boisguerin P, Leben R, Leitner D, Krause G, Moelling K, Volkmer-Engert R, Oschkinat H.

J Mol Biol. 2004 Oct 22;343(3):703-18.

PMID:
15465056
3.

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.

Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, Cesareni G.

Science. 2002 Jan 11;295(5553):321-4.

4.

SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family.

Brannetti B, Via A, Cestra G, Cesareni G, Helmer-Citterich M.

J Mol Biol. 2000 Apr 28;298(2):313-28.

PMID:
10764600
5.

A high efficiency strategy for binding property characterization of peptide-binding domains.

Song E, Gao S, Tian R, Ma S, Huang H, Guo J, Li Y, Zhang L, Gao Y.

Mol Cell Proteomics. 2006 Aug;5(8):1368-81.

6.

Convergent and divergent ligand specificity among PDZ domains of the LAP and zonula occludens (ZO) families.

Zhang Y, Yeh S, Appleton BA, Held HA, Kausalya PJ, Phua DC, Wong WL, Lasky LA, Wiesmann C, Hunziker W, Sidhu SS.

J Biol Chem. 2006 Aug 4;281(31):22299-311.

7.

A repertoire library that allows the selection of synthetic SH2s with altered binding specificities.

Malabarba MG, Milia E, Faretta M, Zamponi R, Pelicci PG, Di Fiore PP.

Oncogene. 2001 Aug 23;20(37):5186-94.

8.
9.

Reexamination of the recognition preference of the specificity pocket of the Abl SH3 domain.

Santamaria F, Wu Z, Boulègue C, Pál G, Lu W.

J Mol Recognit. 2003 May-Jun;16(3):131-8.

PMID:
12833568
10.
11.

Binding properties of SH3 peptide ligands identified from phage-displayed random peptide libraries.

Hoffman NG, Sparks AB, Carter JM, Kay BK.

Mol Divers. 1996 Oct;2(1-2):5-12.

PMID:
9238627
12.

Coevolution of PDZ domain-ligand interactions analyzed by high-throughput phage display and deep sequencing.

Ernst A, Gfeller D, Kan Z, Seshagiri S, Kim PM, Bader GD, Sidhu SS.

Mol Biosyst. 2010 Oct;6(10):1782-90. doi: 10.1039/c0mb00061b.

PMID:
20714644
13.

An improved method for the synthesis of cellulose membrane-bound peptides with free C termini is useful for PDZ domain binding studies.

Boisguerin P, Leben R, Ay B, Radziwill G, Moelling K, Dong L, Volkmer-Engert R.

Chem Biol. 2004 Apr;11(4):449-59.

15.
16.

Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions.

Schillinger C, Boisguerin P, Krause G.

Bioinformatics. 2009 Jul 1;25(13):1632-9. doi: 10.1093/bioinformatics/btp264.

PMID:
19376827
17.
18.

Analysis of the thermodynamics of binding of an SH3 domain to proline-rich peptides using a chimeric fusion protein.

Candel AM, van Nuland NA, Martin-Sierra FM, Martinez JC, Conejero-Lara F.

J Mol Biol. 2008 Mar 14;377(1):117-35. doi: 10.1016/j.jmb.2007.11.060.

PMID:
18234212
19.

Computational prediction of protein-protein interactions.

Obenauer JC, Yaffe MB.

Methods Mol Biol. 2004;261:445-68. Review.

PMID:
15064475
20.

Elucidation of the binding preferences of peptide recognition modules: SH3 and PDZ domains.

Teyra J, Sidhu SS, Kim PM.

FEBS Lett. 2012 Aug 14;586(17):2631-7. doi: 10.1016/j.febslet.2012.05.043. Review.

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