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Items: 1 to 20 of 58

1.

Mining proteases in the genome databases.

Coates D.

Essays Biochem. 2002;38:185-96. Review.

PMID:
12463170
3.

PPD - Proteome Profile Database.

Sakharkar KR, Chow VT.

In Silico Biol. 2004;4(2):219-23.

PMID:
15107025
4.

Human and mouse proteases: a comparative genomic approach.

Puente XS, Sánchez LM, Overall CM, López-Otín C.

Nat Rev Genet. 2003 Jul;4(7):544-58. Review.

PMID:
12838346
5.

XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis.

Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR.

BMC Genomics. 2005 Sep 14;6:123.

6.

Genome-wide validation of Magnaporthe grisea gene structures based on transcription evidence.

Numa H, Nishimura M, Tanaka T, Kanamori H, Yang CC, Matsumoto T, Nagamura Y, Itoh T.

FEBS Lett. 2009 Feb 18;583(4):797-800. doi: 10.1016/j.febslet.2009.01.041. Epub 2009 Jan 30.

7.
8.

Bioinformatics of proteases in the MEROPS database.

Barrett AJ.

Curr Opin Drug Discov Devel. 2004 May;7(3):334-41. Review.

PMID:
15216937
9.

Integrating gene and protein expression data: pattern analysis and profile mining.

Cox B, Kislinger T, Emili A.

Methods. 2005 Mar;35(3):303-14. Epub 2005 Jan 12. Review.

PMID:
15722226
10.

A genomic perspective on human proteases.

Southan C.

FEBS Lett. 2001 Jun 8;498(2-3):214-8. Review.

11.

Molecular cloning and characterization of cDNA encoding fibrinolytic enzyme-3 from earthworm Eisenia foetida.

Dong GQ, Yuan XL, Shan YJ, Zhao ZH, Chen JP, Cong YW.

Acta Biochim Biophys Sin (Shanghai). 2004 Apr;36(4):303-8.

PMID:
15253157
12.

WebTraceMiner: a web service for processing and mining EST sequence trace files.

Liang C, Wang G, Liu L, Ji G, Liu Y, Chen J, Webb JS, Reese G, Dean JF.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W137-42. Epub 2007 May 8.

13.

A dynamic query system for supporting phenotype mining in genetic studies.

Nuzzo A, Segagni D, Milani G, Rognoni C, Bellazzi R.

Stud Health Technol Inform. 2007;129(Pt 2):1275-9.

PMID:
17911920
14.

Global gene expression analysis by combinatorial optimization.

Ameur A, Aurell E, Carlsson M, Westholm JO.

In Silico Biol. 2004;4(2):225-41.

PMID:
15107026
15.

JIGSAW: integration of multiple sources of evidence for gene prediction.

Allen JE, Salzberg SL.

Bioinformatics. 2005 Sep 15;21(18):3596-603. Epub 2005 Aug 2.

PMID:
16076884
16.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

17.

Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB).

Yamasaki C, Koyanagi KO, Fujii Y, Itoh T, Barrero R, Tamura T, Yamaguchi-Kabata Y, Tanino M, Takeda J, Fukuchi S, Miyazaki S, Nomura N, Sugano S, Imanishi T, Gojobori T.

Gene. 2005 Dec 30;364:99-107. Epub 2005 Sep 26.

PMID:
16185827
18.

Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families.

Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R.

Gene. 2008 Jan 15;407(1-2):199-215. Epub 2007 Oct 15.

PMID:
17996400
19.

Automated yeast two-hybrid screening for nuclear receptor-interacting proteins.

Albers M, Kranz H, Kober I, Kaiser C, Klink M, Suckow J, Kern R, Koegl M.

Mol Cell Proteomics. 2005 Feb;4(2):205-13. Epub 2004 Dec 15.

20.

ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs).

Liang C, Wang G, Liu L, Ji G, Fang L, Liu Y, Carter K, Webb JS, Dean JF.

BMC Genomics. 2007 May 29;8:134.

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