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Items: 1 to 20 of 113

1.

Evolution of enzymes in metabolism: a network perspective.

Alves R, Chaleil RA, Sternberg MJ.

J Mol Biol. 2002 Jul 19;320(4):751-70. Erratum in: J Mol Biol 2002 Nov 22;324(2):387.

PMID:
12095253
2.
3.

The origin and evolution of modern metabolism.

Caetano-Anollés G, Yafremava LS, Gee H, Caetano-Anollés D, Kim HS, Mittenthal JE.

Int J Biochem Cell Biol. 2009 Feb;41(2):285-97. doi: 10.1016/j.biocel.2008.08.022. Review.

PMID:
18790074
4.

Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli.

Rison SC, Teichmann SA, Thornton JM.

J Mol Biol. 2002 May 3;318(3):911-32.

PMID:
12054833
5.

On the levels of enzymatic substrate specificity: implications for the early evolution of metabolic pathways.

Lazcano A, Díaz-Villagómez E, Mills T, Oró J.

Adv Space Res. 1995 Mar;15(3):345-56. Review.

PMID:
11539248
7.

Catalysing new reactions during evolution: economy of residues and mechanism.

Bartlett GJ, Borkakoti N, Thornton JM.

J Mol Biol. 2003 Aug 22;331(4):829-60.

PMID:
12909013
8.

The role of log-normal dynamics in the evolution of biochemical pathways.

Nacher JC, Ochiai T, Yamada T, Kanehisa M, Akutsu T.

Biosystems. 2006 Jan;83(1):26-37.

PMID:
16236424
9.

Analogous enzymes: independent inventions in enzyme evolution.

Galperin MY, Walker DR, Koonin EV.

Genome Res. 1998 Aug;8(8):779-90.

10.

Evolution of metabolic networks by gain and loss of enzymatic reaction in eukaryotes.

Tanaka T, Ikeo K, Gojobori T.

Gene. 2006 Jan 3;365:88-94.

PMID:
16360290
11.

Network analysis of metabolic enzyme evolution in Escherichia coli.

Light S, Kraulis P.

BMC Bioinformatics. 2004 Feb 18;5:15.

12.

Pathway evolution, structurally speaking.

Rison SC, Thornton JM.

Curr Opin Struct Biol. 2002 Jun;12(3):374-82. Review.

PMID:
12127458
13.
14.
15.

Protein evolution on a human signaling network.

Cui Q, Purisima EO, Wang E.

BMC Syst Biol. 2009 Feb 18;3:21. doi: 10.1186/1752-0509-3-21.

16.

Insights to metabolic network evolution by fusion proteins.

Sakharkar MK, Yiting Y, Chow VT, Kangueane P.

Front Biosci. 2005 May 1;10:1070-8.

PMID:
15769606
17.

A network perspective on the topological importance of enzymes and their phylogenetic conservation.

Liu WC, Lin WH, Davis AJ, Jordán F, Yang HT, Hwang MJ.

BMC Bioinformatics. 2007 Apr 11;8:121.

18.

Metabolites: a helping hand for pathway evolution?

Schmidt S, Sunyaev S, Bork P, Dandekar T.

Trends Biochem Sci. 2003 Jun;28(6):336-41. Review.

PMID:
12826406
19.

Modeling the complex dynamics of enzyme-pathway coevolution.

Schütte M, Skupin A, Segrè D, Ebenhöh O.

Chaos. 2010 Dec;20(4):045115. doi: 10.1063/1.3530440.

PMID:
21198127
20.

Evolving hardware as model of enzyme evolution.

Lahoz-Beltra R.

Biosystems. 2001 Jun;61(1):15-25.

PMID:
11448522
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