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Items: 1 to 20 of 100

1.

DIANA-EST: a statistical analysis.

Hatzigeorgiou AG, Fiziev P, Reczko M.

Bioinformatics. 2001 Oct;17(10):913-9.

PMID:
11673235
2.

Pattern analysis approach reveals restriction enzyme cutting abnormalities and other cDNA library construction artifacts using raw EST data.

Zhou S, Ji G, Liu X, Li P, Moler J, Karro JE, Liang C.

BMC Biotechnol. 2012 May 3;12:16. doi: 10.1186/1472-6750-12-16.

3.

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.

PMID:
14764557
4.

Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome.

Kim HJ, Baek KH, Lee SW, Kim J, Lee BW, Cho HS, Kim WT, Choi D, Hur CG.

BMC Plant Biol. 2008 Oct 9;8:101. doi: 10.1186/1471-2229-8-101.

6.

ESTprep: preprocessing cDNA sequence reads.

Scheetz TE, Trivedi N, Roberts CA, Kucaba T, Berger B, Robinson NL, Birkett CL, Gavin AJ, O'Leary B, Braun TA, Bonaldo MF, Robinson JP, Sheffield VC, Soares MB, Casavant TL.

Bioinformatics. 2003 Jul 22;19(11):1318-24.

PMID:
12874042
7.

Generation, annotation and analysis of ESTs from Trichoderma harzianum CECT 2413.

Vizcaíno JA, González FJ, Suárez MB, Redondo J, Heinrich J, Delgado-Jarana J, Hermosa R, Gutiérrez S, Monte E, Llobell A, Rey M.

BMC Genomics. 2006 Jul 27;7:193.

8.

[A new method for EST clustering].

Zhang LD, Yuan DJ, Zhang JW, Wang SP, Zhang QF.

Yi Chuan Xue Bao. 2003 Feb;30(2):147-53. Chinese.

PMID:
12776603
9.

Using ESTs to improve the accuracy of de novo gene prediction.

Wei C, Brent MR.

BMC Bioinformatics. 2006 Jul 3;7:327.

10.

Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs.

Borup RH, Toppo S, Chen YW, Teslovich TM, Lanfranchi G, Valle G, Hoffman EP.

BMC Bioinformatics. 2002 Oct 29;3:33.

11.

Human trash ESTs--sequences from cDNA collection that are not aligned to genome assembly.

Panchin AY, Spirin SA, Lukyanov SA, Lebedev YB, Panchin YV.

J Bioinform Comput Biol. 2008 Aug;6(4):759-73.

PMID:
18763741
12.

ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs).

Liang C, Wang G, Liu L, Ji G, Fang L, Liu Y, Carter K, Webb JS, Dean JF.

BMC Genomics. 2007 May 29;8:134.

13.

A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus.

Marques MC, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, Perez-Amador MA.

BMC Genomics. 2009 Sep 11;10:428. doi: 10.1186/1471-2164-10-428.

14.

SPODOBASE: an EST database for the lepidopteran crop pest Spodoptera.

Nègre V, Hôtelier T, Volkoff AN, Gimenez S, Cousserans F, Mita K, Sabau X, Rocher J, López-Ferber M, d'Alençon E, Audant P, Sabourault C, Bidegainberry V, Hilliou F, Fournier P.

BMC Bioinformatics. 2006 Jun 23;7:322.

15.

Automated clustering and assembly of large EST collections.

Yee DP, Conklin D.

Proc Int Conf Intell Syst Mol Biol. 1998;6:203-11.

PMID:
9783226
16.

WebTraceMiner: a web service for processing and mining EST sequence trace files.

Liang C, Wang G, Liu L, Ji G, Liu Y, Chen J, Webb JS, Reese G, Dean JF.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W137-42. Epub 2007 May 8.

17.

ESTree db: a tool for peach functional genomics.

Lazzari B, Caprera A, Vecchietti A, Stella A, Milanesi L, Pozzi C.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S16.

18.

Fugu ESTs: new resources for transcription analysis and genome annotation.

Clark MS, Edwards YJ, Peterson D, Clifton SW, Thompson AJ, Sasaki M, Suzuki Y, Kikuchi K, Watabe S, Kawakami K, Sugano S, Elgar G, Johnson SL.

Genome Res. 2003 Dec;13(12):2747-53. Epub 2003 Nov 12.

19.

Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping.

Hirosawa M, Nagase T, Murahashi Y, Kikuno R, Ohara O.

DNA Res. 2001 Feb 28;8(1):1-9.

PMID:
11258795
20.

Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information.

Chen YA, McKillen DJ, Wu S, Jenny MJ, Chapman R, Gross PS, Warr GW, Almeida JS.

BMC Bioinformatics. 2004 Dec 7;5:191.

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