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Items: 1 to 20 of 81

1.

A clone-array pooled shotgun strategy for sequencing large genomes.

Cai WW, Chen R, Gibbs RA, Bradley A.

Genome Res. 2001 Oct;11(10):1619-23.

2.

Clone-array pooled shotgun mapping and sequencing: design and analysis of experiments.

Csürös M, Li B, Milosavljevic A.

Genome Inform. 2003;14:186-95.

PMID:
15706533
3.

Parallel construction of orthologous sequence-ready clone contig maps in multiple species.

Thomas JW, Prasad AB, Summers TJ, Lee-Lin SQ, Maduro VV, Idol JR, Ryan JF, Thomas PJ, McDowell JC, Green ED.

Genome Res. 2002 Aug;12(8):1277-85.

4.

Preselection of shotgun clones by oligonucleotide fingerprinting: an efficient and high throughput strategy to reduce redundancy in large-scale sequencing projects.

Radelof U, Hennig S, Seranski P, Steinfath M, Ramser J, Reinhardt R, Poustka A, Francis F, Lehrach H.

Nucleic Acids Res. 1998 Dec 1;26(23):5358-64.

5.

Preparation of a phage DNA fragment library for whole genome shotgun sequencing.

Summer EJ.

Methods Mol Biol. 2009;502:27-46. doi: 10.1007/978-1-60327-565-1_4.

PMID:
19082550
7.

Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing.

Yang TJ, Yu Y, Nah G, Atkins M, Lee S, Frisch DA, Wing RA.

Theor Appl Genet. 2003 Aug;107(4):652-60. Epub 2003 Jun 3.

PMID:
12783166
8.

Using partial genomic fosmid libraries for sequencing complete organellar genomes.

McNeal JR, Leebens-Mack JH, Arumuganathan K, Kuehl JV, Boore JL, DePamphilis CW.

Biotechniques. 2006 Jul;41(1):69-73.

9.

Optimal clone identifier for genomic shotgun libraries: "OC Identifier tool".

Cantão ME, Ferreira JE, Lemos EG.

Genet Mol Res. 2007 Oct 5;6(4):743-55.

10.

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

11.

A physical map of the chicken genome.

Wallis JW, Aerts J, Groenen MA, Crooijmans RP, Layman D, Graves TA, Scheer DE, Kremitzki C, Fedele MJ, Mudd NK, Cardenas M, Higginbotham J, Carter J, McGrane R, Gaige T, Mead K, Walker J, Albracht D, Davito J, Yang SP, Leong S, Chinwalla A, Sekhon M, Wylie K, Dodgson J, Romanov MN, Cheng H, de Jong PJ, Osoegawa K, Nefedov M, Zhang H, McPherson JD, Krzywinski M, Schein J, Hillier L, Mardis ER, Wilson RK, Warren WC.

Nature. 2004 Dec 9;432(7018):761-4.

12.

The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.

Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A.

J Biotechnol. 2009 Mar 10;140(1-2):3-12.

PMID:
19297685
13.

Construction and characterization of a soybean bacterial artificial chromosome library and use of multiple complementary libraries for genome physical mapping.

Wu CC, Nimmakayala P, Santos FA, Springman R, Scheuring C, Meksem K, Lightfoot DA, Zhang HB.

Theor Appl Genet. 2004 Sep;109(5):1041-50. Epub 2004 May 26.

PMID:
15164176
14.

Automated finishing with autofinish.

Gordon D, Desmarais C, Green P.

Genome Res. 2001 Apr;11(4):614-25.

15.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

16.

Shedding genomic light on Aristotle's lantern.

Sodergren E, Shen Y, Song X, Zhang L, Gibbs RA, Weinstock GM.

Dev Biol. 2006 Dec 1;300(1):2-8. Epub 2006 Oct 10. Review.

17.

Integrating sequencing technologies in personal genomics: optimal low cost reconstruction of structural variants.

Du J, Bjornson RD, Zhang ZD, Kong Y, Snyder M, Gerstein MB.

PLoS Comput Biol. 2009 Jul;5(7):e1000432. doi: 10.1371/journal.pcbi.1000432. Epub 2009 Jul 10.

18.

Construction of bacterial artificial chromosome libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont.

Foster JM, Kumar S, Ganatra MB, Kamal IH, Ware J, Ingram J, Pope-Chappell J, Guiliano D, Whitton C, Daub J, Blaxter ML, Slatko BE.

Int J Parasitol. 2004 May;34(6):733-46.

PMID:
15111095
19.

Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource.

Hollich V, Johnson E, Furlong EE, Beckmann B, Carlson J, Celniker SE, Hoheisel JD.

Biotechniques. 2004 Aug;37(2):282-4.

PMID:
15335221
20.

Shotgun sequence assembly and recent segmental duplications within the human genome.

She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE.

Nature. 2004 Oct 21;431(7011):927-30.

PMID:
15496912

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