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Items: 1 to 20 of 96

1.

Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle.

Smith TP, Grosse WM, Freking BA, Roberts AJ, Stone RT, Casas E, Wray JE, White J, Cho J, Fahrenkrug SC, Bennett GL, Heaton MP, Laegreid WW, Rohrer GA, Chitko-McKown CG, Pertea G, Holt I, Karamycheva S, Liang F, Quackenbush J, Keele JW.

Genome Res. 2001 Apr;11(4):626-30.

2.

Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly.

Fahrenkrug SC, Smith TP, Freking BA, Cho J, White J, Vallet J, Wise T, Rohrer G, Pertea G, Sultana R, Quackenbush J, Keele JW.

Mamm Genome. 2002 Aug;13(8):475-8.

PMID:
12226715
3.

Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index.

Sonstegard TS, Capuco AV, White J, Van Tassell CP, Connor EE, Cho J, Sultana R, Shade L, Wray JE, Wells KD, Quackenbush J.

Mamm Genome. 2002 Jul;13(7):373-9.

PMID:
12140684
4.

Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index.

Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R, Burnside J, Aggrey SE, Simon J, Cogburn LA.

Physiol Genomics. 2006 May 16;25(3):514-24. Epub 2006 Mar 22.

5.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

6.

Characterization of a normalized cDNA library from bovine intestinal muscle and epithelial tissues.

Baumann RG, Baldwin RL, Van Tassell CP 6th, Sonstegard TS, Matukumalli LK.

Anim Biotechnol. 2005;16(1):17-29.

PMID:
15926260
7.

Characterization of open reading frame-expressed sequence tags generated from Bos indicus and B. taurus mammary gland cDNA libraries.

da Mota AF, Sonstegard TS, Van Tassell CP, Shade LL, Matukumalli LK, Wood DL, Capuco AV, Brito MA, Connor EE, Martinez ML, Coutinho LL.

Anim Genet. 2004 Jun;35(3):213-9.

PMID:
15147393
8.

The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species.

Quackenbush J, Cho J, Lee D, Liang F, Holt I, Karamycheva S, Parvizi B, Pertea G, Sultana R, White J.

Nucleic Acids Res. 2001 Jan 1;29(1):159-64.

9.

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D71-4.

10.

Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource.

Adzhubei AA, Vlasova AV, Hagen-Larsen H, Ruden TA, Laerdahl JK, Høyheim B.

BMC Genomics. 2007 Jul 2;8:209.

11.

The TIGR gene indices: reconstruction and representation of expressed gene sequences.

Quackenbush J, Liang F, Holt I, Pertea G, Upton J.

Nucleic Acids Res. 2000 Jan 1;28(1):141-5.

12.

Generation of EST and cDNA microarray resources for the study of bovine immunobiology.

Yao J, Burton JL, Saama P, Sipkovsky S, Coussens PM.

Acta Vet Scand. 2001;42(3):391-405.

PMID:
11887399
13.

Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys.

Susko E, Roger AJ.

Bioinformatics. 2004 Sep 22;20(14):2279-87. Epub 2004 Apr 1.

PMID:
15059814
14.

Penaeus monodon gene discovery project: the generation of an EST collection and establishment of a database.

Tassanakajon A, Klinbunga S, Paunglarp N, Rimphanitchayakit V, Udomkit A, Jitrapakdee S, Sritunyalucksana K, Phongdara A, Pongsomboon S, Supungul P, Tang S, Kuphanumart K, Pichyangkura R, Lursinsap C.

Gene. 2006 Dec 15;384:104-12. Epub 2006 Jul 28.

PMID:
16945489
15.

BmiGI: a database of cDNAs expressed in Boophilus microplus, the tropical/southern cattle tick.

Guerrero FD, Miller RJ, Rousseau ME, Sunkara S, Quackenbush J, Lee Y, Nene V.

Insect Biochem Mol Biol. 2005 Jun;35(6):585-95. Epub 2005 Mar 27.

PMID:
15857764
16.

An encyclopedia of mouse genes.

Marra M, Hillier L, Kucaba T, Allen M, Barstead R, Beck C, Blistain A, Bonaldo M, Bowers Y, Bowles L, Cardenas M, Chamberlain A, Chappell J, Clifton S, Favello A, Geisel S, Gibbons M, Harvey N, Hill F, Jackson Y, Kohn S, Lennon G, Mardis E, Martin J, Mila L, McCann R, Morales R, Pape D, Person B, Prange C, Ritter E, Soares M, Schurk R, Shin T, Steptoe M, Swaller T, Theising B, Underwood K, Wylie T, Yount T, Wilson R, Waterston R.

Nat Genet. 1999 Feb;21(2):191-4.

PMID:
9988271
17.

Development of a porcine brain cDNA library, EST database, and microarray resource.

Nobis W, Ren X, Suchyta SP, Suchyta TR, Zanella AJ, Coussens PM.

Physiol Genomics. 2003 Dec 16;16(1):153-9.

PMID:
14559975
18.

Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants.

Wistow G, Bernstein SL, Wyatt MK, Behal A, Touchman JW, Bouffard G, Smith D, Peterson K.

Mol Vis. 2002 Jun 15;8:171-84.

19.

Establishment of a high throughput EST sequencing system using poly(A) tail-removed cDNA libraries and determination of 36,000 bovine ESTs.

Takasuga A, Hirotsune S, Itoh R, Jitohzono A, Suzuki H, Aso H, Sugimoto Y.

Nucleic Acids Res. 2001 Nov 15;29(22):E108.

20.

A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).

Ralph SG, Chun HJ, Kolosova N, Cooper D, Oddy C, Ritland CE, Kirkpatrick R, Moore R, Barber S, Holt RA, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J.

BMC Genomics. 2008 Oct 14;9:484. doi: 10.1186/1471-2164-9-484.

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