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Items: 1 to 20 of 3363

2.

Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in six 22-base pair deoxyoligonucleotides.

Riccelli PV, Vallone PM, Kashin I, Faldasz BD, Lane MJ, Benight AS.

Biochemistry. 1999 Aug 24;38(34):11197-208.

PMID:
10460177
3.

Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.

Vallone PM, Paner TM, Hilario J, Lane MJ, Faldasz BD, Benight AS.

Biopolymers. 1999 Oct 5;50(4):425-42.

PMID:
10423551
4.

Thermodynamic stability of DNA tandem mismatches.

Bourdélat-Parks BN, Wartell RM.

Biochemistry. 2004 Aug 3;43(30):9918-25.

PMID:
15274646
5.

Origins of the "nucleation" free energy in the hybridization thermodynamics of short duplex DNA.

Manyanga F, Horne MT, Brewood GP, Fish DJ, Dickman R, Benight AS.

J Phys Chem B. 2009 Mar 5;113(9):2556-63.

PMID:
19708103
6.

Stability of DNA duplexes containing GG, CC, AA, and TT mismatches.

Tikhomirova A, Beletskaya IV, Chalikian TV.

Biochemistry. 2006 Sep 5;45(35):10563-71.

PMID:
16939208
8.
9.

Influence of buffer species on the thermodynamics of short DNA duplex melting: sodium phosphate versus sodium cacodylate.

Alemayehu S, Fish DJ, Brewood GP, Horne MT, Manyanga F, Dickman R, Yates I, Benight AS.

J Phys Chem B. 2009 Mar 5;113(9):2578-86.

PMID:
19708201
10.

Sequence dependence of the free energy of B-Z junction formation in deoxyoligonucleotides.

Sheardy RD, Suh D, Kurzinsky R, Doktycz MJ, Benight AS, Chaires JB.

J Mol Biol. 1993 May 20;231(2):475-88.

PMID:
8510158
11.
12.

Energetic basis of molecular recognition in a DNA aptamer.

Bishop GR, Ren J, Polander BC, Jeanfreau BD, Trent JO, Chaires JB.

Biophys Chem. 2007 Mar;126(1-3):165-75. Epub 2006 Aug 17.

PMID:
16914261
14.

DNA and RNA oligomer sequences from the 3' noncoding region of the chicken glutamine synthetase gene from intramolecular hairpins.

Riccelli PV, Hilario J, Gallo FJ, Young AP, Benight AS.

Biochemistry. 1996 Dec 3;35(48):15364-72.

PMID:
8952488
15.

Correcting for heat capacity and 5'-TA type terminal nearest neighbors improves prediction of DNA melting temperatures using nearest-neighbor thermodynamic models.

Hughesman CB, Turner RF, Haynes C.

Biochemistry. 2011 Apr 5;50(13):2642-9. doi: 10.1021/bi101653z. Epub 2011 Mar 8.

PMID:
21323352
16.

Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA.

Movileanu L, Benevides JM, Thomas GJ Jr.

Nucleic Acids Res. 2002 Sep 1;30(17):3767-77.

17.

Studies of DNA dumbbells VIII. Melting analysis of DNA dumbbells with dinucleotide repeat stem sequences.

Mandell KE, Vallone PM, Owczarzy R, Riccelli PV, Benight AS.

Biopolymers. 2006 Jun 15;82(3):199-221.

PMID:
16345003
18.

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