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Items: 1 to 20 of 69

1.

Annotating eukaryote genomes.

Lewis S, Ashburner M, Reese MG.

Curr Opin Struct Biol. 2000 Jun;10(3):349-54. Review.

PMID:
10851187
3.

Applications of InterPro in protein annotation and genome analysis.

Biswas M, O'Rourke JF, Camon E, Fraser G, Kanapin A, Karavidopoulou Y, Kersey P, Kriventseva E, Mittard V, Mulder N, Phan I, Servant F, Apweiler R.

Brief Bioinform. 2002 Sep;3(3):285-95.

PMID:
12230037
4.

Creating the gene ontology resource: design and implementation.

Gene Ontology Consortium.

Genome Res. 2001 Aug;11(8):1425-33.

5.

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

BMC Bioinformatics. 2008 Jan 25;9:52. doi: 10.1186/1471-2105-9-52.

6.
7.

Large-scale protein annotation through gene ontology.

Xie H, Wasserman A, Levine Z, Novik A, Grebinskiy V, Shoshan A, Mintz L.

Genome Res. 2002 May;12(5):785-94.

8.

MaGe: a microbial genome annotation system supported by synteny results.

Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Médigue C.

Nucleic Acids Res. 2006 Jan 10;34(1):53-65. Print 2006.

9.

Automatic annotation of protein function based on family identification.

Abascal F, Valencia A.

Proteins. 2003 Nov 15;53(3):683-92.

PMID:
14579359
10.

Analysis and comparison of metabolic pathway databases.

Wittig U, De Beuckelaer A.

Brief Bioinform. 2001 May;2(2):126-42.

PMID:
11465731
11.

A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation.

Ribeiro Ede O, Zerlotini GG, Lopes IR, Ribeiro VB, Melo AC, Walter ME, Costa MM; BIOFOCO Network.

Genet Mol Res. 2005 Sep 30;4(3):590-8.

PMID:
16342044
12.

DBMODELING: a database applied to the study of protein targets from genome projects.

da Silveira NJ, Bonalumi CE, Uchõa HB, Pereira JH, Canduri F, de Azevedo WF.

Cell Biochem Biophys. 2006;44(3):366-74.

PMID:
16679523
13.

Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource.

Adzhubei AA, Vlasova AV, Hagen-Larsen H, Ruden TA, Laerdahl JK, Høyheim B.

BMC Genomics. 2007 Jul 2;8:209.

15.

Expressed peptide tags: an additional layer of data for genome annotation.

Savidor A, Donahoo RS, Hurtado-Gonzales O, Verberkmoes NC, Shah MB, Lamour KH, McDonald WH.

J Proteome Res. 2006 Nov;5(11):3048-58.

PMID:
17081056
16.

Parasite genome databases and web-based resources.

Hertz-Fowler C, Hall N.

Methods Mol Biol. 2004;270:45-74.

PMID:
15153622
17.

Has the yo-yo stopped? An assessment of human protein-coding gene number.

Southan C.

Proteomics. 2004 Jun;4(6):1712-26. Review.

18.

Functional annotation of the Arabidopsis genome using controlled vocabularies.

Berardini TZ, Mundodi S, Reiser L, Huala E, Garcia-Hernandez M, Zhang P, Mueller LA, Yoon J, Doyle A, Lander G, Moseyko N, Yoo D, Xu I, Zoeckler B, Montoya M, Miller N, Weems D, Rhee SY.

Plant Physiol. 2004 Jun;135(2):745-55. Epub 2004 Jun 1.

19.

GenColors: annotation and comparative genomics of prokaryotes made easy.

Romualdi A, Felder M, Rose D, Gausmann U, Schilhabel M, Glöckner G, Platzer M, Sühnel J.

Methods Mol Biol. 2007;395:75-96.

PMID:
17993668
20.

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).

Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM.

Nucleic Acids Res. 2002 Jan 1;30(1):69-72.

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