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Items: 1 to 20 of 145

1.

Genie--gene finding in Drosophila melanogaster.

Reese MG, Kulp D, Tammana H, Haussler D.

Genome Res. 2000 Apr;10(4):529-38.

2.

Genome annotation assessment in Drosophila melanogaster.

Reese MG, Hartzell G, Harris NL, Ohler U, Abril JF, Lewis SE.

Genome Res. 2000 Apr;10(4):483-501.

3.

Improved splice site detection in Genie.

Reese MG, Eeckman FH, Kulp D, Haussler D.

J Comput Biol. 1997 Fall;4(3):311-23.

PMID:
9278062
4.

Ab initio gene finding in Drosophila genomic DNA.

Salamov AA, Solovyev VV.

Genome Res. 2000 Apr;10(4):516-22.

6.

Drosophila genomic sequence annotation using the BLOCKS+ database.

Henikoff JG, Henikoff S.

Genome Res. 2000 Apr;10(4):543-6.

7.
8.

Using GeneWise in the Drosophila annotation experiment.

Birney E, Durbin R.

Genome Res. 2000 Apr;10(4):547-8.

9.
10.

GeneID in Drosophila.

Parra G, Blanco E, Guigó R.

Genome Res. 2000 Apr;10(4):511-5.

11.

MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.

Gaasterland T, Sczyrba A, Thomas E, Aytekin-Kurban G, Gordon P, Sensen CW.

Genome Res. 2000 Apr;10(4):502-10.

12.

SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model.

Alexandersson M, Cawley S, Pachter L.

Genome Res. 2003 Mar;13(3):496-502.

13.

A generalized hidden Markov model for the recognition of human genes in DNA.

Kulp D, Haussler D, Reese MG, Eeckman FH.

Proc Int Conf Intell Syst Mol Biol. 1996;4:134-42.

PMID:
8877513
14.

Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis.

Andrews J, Bouffard GG, Cheadle C, Lü J, Becker KG, Oliver B.

Genome Res. 2000 Dec;10(12):2030-43.

15.

Finding genes in DNA with a Hidden Markov Model.

Henderson J, Salzberg S, Fasman KH.

J Comput Biol. 1997 Summer;4(2):127-41.

PMID:
9228612
16.

Recognition of human genes by stochastic parsing.

Asai K, Itou K, Ueno Y, Yada T.

Pac Symp Biocomput. 1998:228-39.

17.

GeneBuilder: interactive in silico prediction of gene structure.

Milanesi L, D'Angelo D, Rogozin IB.

Bioinformatics. 1999 Jul-Aug;15(7-8):612-21.

PMID:
10487869
18.

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.

Arumugam M, Wei C, Brown RH, Brent MR.

Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.

19.

An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region.

Ashburner M, Misra S, Roote J, Lewis SE, Blazej R, Davis T, Doyle C, Galle R, George R, Harris N, Hartzell G, Harvey D, Hong L, Houston K, Hoskins R, Johnson G, Martin C, Moshrefi A, Palazzolo M, Reese MG, Spradling A, Tsang G, Wan K, Whitelaw K, Celniker S, et al.

Genetics. 1999 Sep;153(1):179-219.

20.

Improving gene-finding in Chlamydomonas reinhardtii:GreenGenie2.

Kwan AL, Li L, Kulp DC, Dutcher SK, Stormo GD.

BMC Genomics. 2009 May 7;10:210. doi: 10.1186/1471-2164-10-210.

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