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Items: 1 to 20 of 101

1.

Genomic signature: characterization and classification of species assessed by chaos game representation of sequences.

Deschavanne PJ, Giron A, Vilain J, Fagot G, Fertil B.

Mol Biol Evol. 1999 Oct;16(10):1391-9.

PMID:
10563018
2.

The spectrum of genomic signatures: from dinucleotides to chaos game representation.

Wang Y, Hill K, Singh S, Kari L.

Gene. 2005 Feb 14;346:173-85.

PMID:
15716010
3.

Additive methods for genomic signatures.

Karamichalis R, Kari L, Konstantinidis S, Kopecki S, Solis-Reyes S.

BMC Bioinformatics. 2016 Aug 22;17(1):313. doi: 10.1186/s12859-016-1157-8.

4.

An investigation into inter- and intragenomic variations of graphic genomic signatures.

Karamichalis R, Kari L, Konstantinidis S, Kopecki S.

BMC Bioinformatics. 2015 Aug 7;16:246. doi: 10.1186/s12859-015-0655-4.

5.

Chaos game representation for comparison of whole genomes.

Joseph J, Sasikumar R.

BMC Bioinformatics. 2006 May 5;7:243.

6.

[Multifractal analysis of genomes sequences' CGR graph].

Fu W, Wang Y, Lu D.

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2007 Jun;24(3):522-5. Chinese.

PMID:
17713253
7.

Entropic profiles of DNA sequences through chaos-game-derived images.

Oliver JL, Bernaola-Galván P, Guerrero-García J, Román-Roldán R.

J Theor Biol. 1993 Feb 21;160(4):457-70.

PMID:
8501918
8.

Whole genome/proteome based phylogeny reconstruction for prokaryotes using higher order Markov model and chaos game representation.

Yang WF, Yu ZG, Anh V.

Mol Phylogenet Evol. 2016 Mar;96:102-111. doi: 10.1016/j.ympev.2015.12.011. Epub 2015 Dec 24.

PMID:
26724405
9.

Applying MSSIM combined chaos game representation to genome sequences analysis.

Ni HM, Qi DW, Mu H.

Genomics. 2018 May;110(3):180-190. doi: 10.1016/j.ygeno.2017.09.010. Epub 2017 Sep 21.

PMID:
28941638
10.

Analysis of genomic sequences by Chaos Game Representation.

Almeida JS, Carriço JA, Maretzek A, Noble PA, Fletcher M.

Bioinformatics. 2001 May;17(5):429-37.

PMID:
11331237
11.

A phylogenetic analysis of the brassicales clade based on an alignment-free sequence comparison method.

Hatje K, Kollmar M.

Front Plant Sci. 2012 Aug 29;3:192. doi: 10.3389/fpls.2012.00192. eCollection 2012.

12.
13.

Numerical encoding of DNA sequences by chaos game representation with application in similarity comparison.

Hoang T, Yin C, Yau SS.

Genomics. 2016 Oct;108(3-4):134-142. doi: 10.1016/j.ygeno.2016.08.002. Epub 2016 Aug 15.

PMID:
27538895
15.

Using genomic signatures for HIV-1 sub-typing.

Pandit A, Sinha S.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S26. doi: 10.1186/1471-2105-11-S1-S26.

16.

Informatics for unveiling hidden genome signatures.

Abe T, Kanaya S, Kinouchi M, Ichiba Y, Kozuki T, Ikemura T.

Genome Res. 2003 Apr;13(4):693-702.

17.

Data on graphical representation (CGR and FCGR) of bacterial and archaeal species from two Soda Lakes.

Rekadwad BN, Khobragade CN.

Data Brief. 2017 Mar 16;12:72-76. doi: 10.1016/j.dib.2017.03.017. eCollection 2017 Jun.

18.

Phylogenetic signals in DNA composition: limitations and prospects.

Mrázek J.

Mol Biol Evol. 2009 May;26(5):1163-9. doi: 10.1093/molbev/msp032. Epub 2009 Feb 20.

PMID:
19233962
19.

Mapping the space of genomic signatures.

Kari L, Hill KA, Sayem AS, Karamichalis R, Bryans N, Davis K, Dattani NS.

PLoS One. 2015 May 22;10(5):e0119815. doi: 10.1371/journal.pone.0119815. eCollection 2015.

20.

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