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Items: 1 to 20 of 102


UltraStrain: An NGS-Based Ultra Sensitive Strain Typing Method for Salmonella enterica.

Yang W, Huang L, Shi C, Wang L, Yu R.

Front Genet. 2019 Apr 3;10:276. doi: 10.3389/fgene.2019.00276. eCollection 2019.


Whole-Genome Sequencing and Bioinformatic Analysis of Isolates from Foodborne Illness Outbreaks of Campylobacter jejuni and Salmonella enterica.

Oakeson KF, Wagner JM, Rohrwasser A, Atkinson-Dunn R.

J Clin Microbiol. 2018 Oct 25;56(11). pii: e00161-18. doi: 10.1128/JCM.00161-18. Print 2018 Nov.


Enrichment, Amplification, and Sequence-Based Typing of Salmonella enterica and Other Foodborne Pathogens.

Edlind T, Brewster JD, Paoli GC.

J Food Prot. 2017 Jan;80(1):15-24. doi: 10.4315/0362-028X.JFP-16-014.


Laboratory Investigation of Salmonella enterica serovar Poona Outbreak in California: Comparison of Pulsed-Field Gel Electrophoresis (PFGE) and Whole Genome Sequencing (WGS) Results.

Kozyreva VK, Crandall J, Sabol A, Poe A, Zhang P, Concepción-Acevedo J, Schroeder MN, Wagner D, Higa J, Trees E, Chaturvedi V.

PLoS Curr. 2016 Nov 22;8. pii: ecurrents.outbreaks.1bb3e36e74bd5779bc43ac3a8dae52e6. doi: 10.1371/currents.outbreaks.1bb3e36e74bd5779bc43ac3a8dae52e6.


Comparison of advanced whole genome sequence-based methods to distinguish strains of Salmonella enterica serovar Heidelberg involved in foodborne outbreaks in Québec.

Vincent C, Usongo V, Berry C, Tremblay DM, Moineau S, Yousfi K, Doualla-Bell F, Fournier E, Nadon C, Goodridge L, Bekal S.

Food Microbiol. 2018 Aug;73:99-110. doi: 10.1016/ Epub 2018 Jan 12.


Characterization of Foodborne Outbreaks of Salmonella enterica Serovar Enteritidis with Whole-Genome Sequencing Single Nucleotide Polymorphism-Based Analysis for Surveillance and Outbreak Detection.

Taylor AJ, Lappi V, Wolfgang WJ, Lapierre P, Palumbo MJ, Medus C, Boxrud D.

J Clin Microbiol. 2015 Oct;53(10):3334-40. doi: 10.1128/JCM.01280-15. Epub 2015 Aug 12.


A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens.

Katz LS, Griswold T, Williams-Newkirk AJ, Wagner D, Petkau A, Sieffert C, Van Domselaar G, Deng X, Carleton HA.

Front Microbiol. 2017 Mar 13;8:375. doi: 10.3389/fmicb.2017.00375. eCollection 2017.


Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.

Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM.

PLoS One. 2014 Feb 4;9(2):e87991. doi: 10.1371/journal.pone.0087991. eCollection 2014.


Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective.

Rumore J, Tschetter L, Kearney A, Kandar R, McCormick R, Walker M, Peterson CL, Reimer A, Nadon C.

BMC Genomics. 2018 Dec 4;19(1):870. doi: 10.1186/s12864-018-5243-3.


Whole Genome DNA Sequence Analysis of Salmonella subspecies enterica serotype Tennessee obtained from related peanut butter foodborne outbreaks.

Wilson MR, Brown E, Keys C, Strain E, Luo Y, Muruvanda T, Grim C, Jean-Gilles Beaubrun J, Jarvis K, Ewing L, Gopinath G, Hanes D, Allard MW, Musser S.

PLoS One. 2016 Jun 3;11(6):e0146929. doi: 10.1371/journal.pone.0146929. eCollection 2016.


Characterization of the Salmonella enterica Serotype Isangi Isolated from Patients for the First Time in China.

Li XP, Gao RH, Hou PB, Ren YY, Zhang HN, Jiang KY, Chen YZ, Qi ZG, Xu M, Bi ZW.

Foodborne Pathog Dis. 2017 Aug;14(8):427-431. doi: 10.1089/fpd.2016.2269. Epub 2017 May 12.


Retrospective use of whole genome sequencing to better understand an outbreak of Salmonella enterica serovar Mbandaka in New South Wales, Australia.

Lindsay C, Flint J, Lilly K, Hope K, Wang Q, Howard P, Sintchenko V, Durrheim DN.

Western Pac Surveill Response J. 2018 Apr 23;9(2):20-25. doi: 10.5365/wpsar.2017.8.4.008. eCollection 2018 Apr-Jun.


A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type.

Bakker HC, Switt AI, Cummings CA, Hoelzer K, Degoricija L, Rodriguez-Rivera LD, Wright EM, Fang R, Davis M, Root T, Schoonmaker-Bopp D, Musser KA, Villamil E, Waechter H, Kornstein L, Furtado MR, Wiedmann M.

Appl Environ Microbiol. 2011 Dec;77(24):8648-55. doi: 10.1128/AEM.06538-11. Epub 2011 Oct 14.


Simultaneous analysis of multiple enzymes increases accuracy of pulsed-field gel electrophoresis in assigning genetic relationships among homogeneous Salmonella strains.

Zheng J, Keys CE, Zhao S, Ahmed R, Meng J, Brown EW.

J Clin Microbiol. 2011 Jan;49(1):85-94. doi: 10.1128/JCM.00120-10. Epub 2010 Oct 27.


Quasimetagenomics-Based and Real-Time-Sequencing-Aided Detection and Subtyping of Salmonella enterica from Food Samples.

Hyeon JY, Li S, Mann DA, Zhang S, Li Z, Chen Y, Deng X.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e02340-17. doi: 10.1128/AEM.02340-17. Print 2018 Feb 15.


A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of Listeria monocytogenes and Salmonella enterica.

Portmann AC, Fournier C, Gimonet J, Ngom-Bru C, Barretto C, Baert L.

Front Microbiol. 2018 Mar 14;9:446. doi: 10.3389/fmicb.2018.00446. eCollection 2018.


A Nonautochthonous U.S. Strain of Vibrio parahaemolyticus Isolated from Chesapeake Bay Oysters Caused the Outbreak in Maryland in 2010.

Haendiges J, Jones J, Myers RA, Mitchell CS, Butler E, Toro M, Gonzalez-Escalona N.

Appl Environ Microbiol. 2016 May 16;82(11):3208-3216. doi: 10.1128/AEM.00096-16. Print 2016 Jun 1.


Whole genome sequencing provides an unambiguous link between Salmonella Dublin outbreak strain and a historical isolate.

Mohammed M, Delappe N, O'Connor J, McKeown P, Garvey P, Cormican M.

Epidemiol Infect. 2016 Feb;144(3):576-81. doi: 10.1017/S0950268815001636. Epub 2015 Jul 13.


Evaluation of WGS based approaches for investigating a food-borne outbreak caused by Salmonella enterica serovar Derby in Germany.

Simon S, Trost E, Bender J, Fuchs S, Malorny B, Rabsch W, Prager R, Tietze E, Flieger A.

Food Microbiol. 2018 May;71:46-54. doi: 10.1016/ Epub 2017 Aug 25.


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