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Items: 1 to 20 of 102

1.

Label-free absolute protein quantification with data-independent acquisition.

He B, Shi J, Wang X, Jiang H, Zhu HJ.

J Proteomics. 2019 Mar 14;200:51-59. doi: 10.1016/j.jprot.2019.03.005. [Epub ahead of print]

PMID:
30880166
2.

DIA-SIFT: A Precursor and Product Ion Filter for Accurate Stable Isotope Data-Independent Acquisition Proteomics.

Haynes SE, Majmudar JD, Martin BR.

Anal Chem. 2018 Aug 7;90(15):8722-8726. doi: 10.1021/acs.analchem.8b01618. Epub 2018 Jul 19.

PMID:
29989796
3.
4.

Technical advances in proteomics: new developments in data-independent acquisition.

Hu A, Noble WS, Wolf-Yadlin A.

F1000Res. 2016 Mar 31;5. pii: F1000 Faculty Rev-419. doi: 10.12688/f1000research.7042.1. eCollection 2016. Review.

5.

MdFDIA: A Mass Defect Based Four-Plex Data-Independent Acquisition Strategy for Proteome Quantification.

Di Y, Zhang Y, Zhang L, Tao T, Lu H.

Anal Chem. 2017 Oct 3;89(19):10248-10255. doi: 10.1021/acs.analchem.7b01635. Epub 2017 Sep 19.

PMID:
28872844
6.

Low Resolution Data-Independent Acquisition in an LTQ-Orbitrap Allows for Simplified and Fully Untargeted Analysis of Histone Modifications.

Sidoli S, Simithy J, Karch KR, Kulej K, Garcia BA.

Anal Chem. 2015 Nov 17;87(22):11448-54. doi: 10.1021/acs.analchem.5b03009. Epub 2015 Nov 5.

7.

Multiplexed quantification for data-independent acquisition.

Minogue CE, Hebert AS, Rensvold JW, Westphall MS, Pagliarini DJ, Coon JJ.

Anal Chem. 2015 Mar 3;87(5):2570-5. doi: 10.1021/ac503593d. Epub 2015 Feb 11.

8.

Analysis of 1508 plasma samples by capillary flow data-independent acquisition profiles proteomics of weight loss and maintenance.

Bruderer R, Muntel J, Müller S, Bernhardt OM, Gandhi T, Cominetti O, Macron C, Carayol J, Rinner O, Astrup A, Saris WHM, Hager J, Valsesia A, Dayon L, Reiter L.

Mol Cell Proteomics. 2019 Apr 4. pii: mcp.RA118.001288. doi: 10.1074/mcp.RA118.001288. [Epub ahead of print]

9.

Isotope coded protein label quantification of serum proteins--comparison with the label-free LC-MS and validation using the MRM approach.

Turtoi A, Mazzucchelli GD, De Pauw E.

Talanta. 2010 Feb 15;80(4):1487-95. doi: 10.1016/j.talanta.2009.07.035. Epub 2009 Jul 25.

PMID:
20082806
10.
11.

Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry.

Barkovits K, Linden A, Galozzi S, Schilde L, Pacharra S, Mollenhauer B, Stoepel N, Steinbach S, May C, Uszkoreit J, Eisenacher M, Marcus K.

J Proteome Res. 2018 Oct 5;17(10):3418-3430. doi: 10.1021/acs.jproteome.8b00308. Epub 2018 Sep 12.

PMID:
30207155
12.

MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments.

Rardin MJ, Schilling B, Cheng LY, MacLean BX, Sorensen DJ, Sahu AK, MacCoss MJ, Vitek O, Gibson BW.

Mol Cell Proteomics. 2015 Sep;14(9):2405-19. doi: 10.1074/mcp.O115.048181. Epub 2015 May 17.

13.

Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time.

Muntel J, Kirkpatrick J, Bruderer R, Huang T, Vitek O, Ori A, Reiter L.

J Proteome Res. 2019 Mar 1;18(3):1340-1351. doi: 10.1021/acs.jproteome.8b00898. Epub 2019 Feb 20.

PMID:
30726097
14.

Systematic evaluation of data-independent acquisition for sensitive and reproducible proteomics-a prototype design for a single injection assay.

Heaven MR, Funk AJ, Cobbs AL, Haffey WD, Norris JL, McCullumsmith RE, Greis KD.

J Mass Spectrom. 2016 Jan;51(1):1-11. doi: 10.1002/jms.3716.

15.

Multiplexed data independent acquisition (MSX-DIA) applied by high resolution mass spectrometry improves quantification quality for the analysis of histone peptides.

Sidoli S, Fujiwara R, Garcia BA.

Proteomics. 2016 Aug;16(15-16):2095-105. doi: 10.1002/pmic.201500527. Epub 2016 Jun 8.

16.

A hybrid retention time alignment algorithm for SWATH-MS data.

Wu L, Amon S, Lam H.

Proteomics. 2016 Aug;16(15-16):2272-83. doi: 10.1002/pmic.201500511.

PMID:
27302277
17.

Software for quantitative proteomic analysis using stable isotope labeling and data independent acquisition.

Huang X, Liu M, Nold MJ, Tian C, Fu K, Zheng J, Geromanos SJ, Ding SJ.

Anal Chem. 2011 Sep 15;83(18):6971-9. doi: 10.1021/ac201555m. Epub 2011 Aug 23.

PMID:
21834580
18.

Protein Biomarker Discovery in Non-depleted Serum by Spectral Library-Based Data-Independent Acquisition Mass Spectrometry.

Kraut A, Louwagie M, Bruley C, Masselon C, Couté Y, Brun V, Hesse AM.

Methods Mol Biol. 2019;1959:129-150. doi: 10.1007/978-1-4939-9164-8_9.

PMID:
30852820
19.

Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry.

Müller F, Kolbowski L, Bernhardt OM, Reiter L, Rappsilber J.

Mol Cell Proteomics. 2019 Apr;18(4):786-795. doi: 10.1074/mcp.TIR118.001276. Epub 2019 Jan 16.

20.

Multiplexed peptide analysis using data-independent acquisition and Skyline.

Egertson JD, MacLean B, Johnson R, Xuan Y, MacCoss MJ.

Nat Protoc. 2015 Jun;10(6):887-903. doi: 10.1038/nprot.2015.055. Epub 2015 May 21.

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