Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 103

1.

Multi-Reference Spectral Library Yields Almost Complete Coverage of Heterogeneous LC-MS/MS Data Sets.

Ammar C, Berchtold E, Csaba G, Schmidt A, Imhof A, Zimmer R.

J Proteome Res. 2019 Apr 5;18(4):1553-1566. doi: 10.1021/acs.jproteome.8b00819. Epub 2019 Mar 8.

PMID:
30793903
2.

Building and searching tandem mass spectral libraries for peptide identification.

Lam H.

Mol Cell Proteomics. 2011 Dec;10(12):R111.008565. doi: 10.1074/mcp.R111.008565. Epub 2011 Sep 6. Review.

3.

Extending the coverage of spectral libraries: a neighbor-based approach to predicting intensities of peptide fragmentation spectra.

Ji C, Arnold RJ, Sokoloski KJ, Hardy RW, Tang H, Radivojac P.

Proteomics. 2013 Mar;13(5):756-65. doi: 10.1002/pmic.201100670. Epub 2013 Feb 4.

4.

Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate.

Ye D, Fu Y, Sun RX, Wang HP, Yuan ZF, Chi H, He SM.

Bioinformatics. 2010 Jun 15;26(12):i399-406. doi: 10.1093/bioinformatics/btq185.

5.

Spectral library searching in proteomics.

Griss J.

Proteomics. 2016 Mar;16(5):729-40. doi: 10.1002/pmic.201500296. Epub 2016 Feb 9. Review.

PMID:
26616598
6.

Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics.

Teleman J, Hauri S, Malmström J.

J Proteome Res. 2017 Jul 7;16(7):2384-2392. doi: 10.1021/acs.jproteome.6b00928. Epub 2017 Jun 6.

PMID:
28516777
7.

A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries.

Hu Y, Li Y, Lam H.

Proteomics. 2011 Dec;11(24):4702-11. doi: 10.1002/pmic.201100316. Epub 2011 Nov 23.

PMID:
22038894
8.

Technical advances in proteomics: new developments in data-independent acquisition.

Hu A, Noble WS, Wolf-Yadlin A.

F1000Res. 2016 Mar 31;5. pii: F1000 Faculty Rev-419. doi: 10.12688/f1000research.7042.1. eCollection 2016. Review.

9.

The NISTmAb tryptic peptide spectral library for monoclonal antibody characterization.

Dong Q, Liang Y, Yan X, Markey SP, Mirokhin YA, Tchekhovskoi DV, Bukhari TH, Stein SE.

MAbs. 2018 Apr;10(3):354-369. doi: 10.1080/19420862.2018.1436921. Epub 2018 Mar 6.

10.

Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra.

Frank AM, Monroe ME, Shah AR, Carver JJ, Bandeira N, Moore RJ, Anderson GA, Smith RD, Pevzner PA.

Nat Methods. 2011 May 15;8(7):587-91. doi: 10.1038/nmeth.1609.

11.

Enhanced peptide quantification using spectral count clustering and cluster abundance.

Lee S, Kwon MS, Lee HJ, Paik YK, Tang H, Lee JK, Park T.

BMC Bioinformatics. 2011 Oct 28;12:423. doi: 10.1186/1471-2105-12-423.

12.

Spectrum-to-spectrum searching using a proteome-wide spectral library.

Yen CY, Houel S, Ahn NG, Old WM.

Mol Cell Proteomics. 2011 Jul;10(7):M111.007666. doi: 10.1074/mcp.M111.007666. Epub 2011 Apr 30.

13.

Metabolomic spectral libraries for data-independent SWATH liquid chromatography mass spectrometry acquisition.

Bruderer T, Varesio E, Hidasi AO, Duchoslav E, Burton L, Bonner R, Hopfgartner G.

Anal Bioanal Chem. 2018 Mar;410(7):1873-1884. doi: 10.1007/s00216-018-0860-x. Epub 2018 Feb 6.

PMID:
29411086
14.

Spectral Libraries for SWATH-MS Assays for Drosophila melanogaster and Solanum lycopersicum.

Fabre B, Korona D, Mata CI, Parsons HT, Deery MJ, Hertog MLATM, Nicolaï BM, Russell S, Lilley KS.

Proteomics. 2017 Nov;17(21). doi: 10.1002/pmic.201700216.

15.

Building high-quality assay libraries for targeted analysis of SWATH MS data.

Schubert OT, Gillet LC, Collins BC, Navarro P, Rosenberger G, Wolski WE, Lam H, Amodei D, Mallick P, MacLean B, Aebersold R.

Nat Protoc. 2015 Mar;10(3):426-41. doi: 10.1038/nprot.2015.015. Epub 2015 Feb 12.

PMID:
25675208
16.

Spectral library generating function for assessing spectrum-spectrum match significance.

Wang M, Bandeira N.

J Proteome Res. 2013 Sep 6;12(9):3944-51. doi: 10.1021/pr400230p. Epub 2013 Jul 31.

17.

Spectral Library Search Improves Assignment of TMT Labeled MS/MS Spectra.

Shen J, Pagala VR, Breuer AM, Peng J, Bin Ma, Wang X.

J Proteome Res. 2018 Sep 7;17(9):3325-3331. doi: 10.1021/acs.jproteome.8b00594. Epub 2018 Aug 16.

18.

Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry.

Parker SJ, Rost H, Rosenberger G, Collins BC, Malmström L, Amodei D, Venkatraman V, Raedschelders K, Van Eyk JE, Aebersold R.

Mol Cell Proteomics. 2015 Oct;14(10):2800-13. doi: 10.1074/mcp.O114.042267. Epub 2015 Jul 21.

19.
20.

Reverse and Random Decoy Methods for False Discovery Rate Estimation in High Mass Accuracy Peptide Spectral Library Searches.

Zhang Z, Burke M, Mirokhin YA, Tchekhovskoi DV, Markey SP, Yu W, Chaerkady R, Hess S, Stein SE.

J Proteome Res. 2018 Feb 2;17(2):846-857. doi: 10.1021/acs.jproteome.7b00614. Epub 2018 Jan 11.

PMID:
29281288

Supplemental Content

Support Center