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Items: 1 to 20 of 98

1.

Rectifying long-standing misconceptions about the ρ statistic for molecular dating.

Macaulay V, Soares P, Richards MB.

PLoS One. 2019 Feb 19;14(2):e0212311. doi: 10.1371/journal.pone.0212311. eCollection 2019.

2.
3.

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.

McCormack JE, Huang H, Knowles LL.

Syst Biol. 2009 Oct;58(5):501-8. doi: 10.1093/sysbio/syp045. Epub 2009 Aug 20.

PMID:
20525604
4.

Bayesian phylogenetic estimation of fossil ages.

Drummond AJ, Stadler T.

Philos Trans R Soc Lond B Biol Sci. 2016 Jul 19;371(1699). pii: 20150129. doi: 10.1098/rstb.2015.0129.

5.

Comparing interval estimates for small sample ordinal CFA models.

Natesan P.

Front Psychol. 2015 Oct 30;6:1599. doi: 10.3389/fpsyg.2015.01599. eCollection 2015.

6.

Sampling distributions, biases, variances, and confidence intervals for genetic correlations.

Liu BH, Knapp SJ, Birkes D.

Theor Appl Genet. 1997 Jan;94(1):8-19. doi: 10.1007/s001220050375.

PMID:
19352739
7.

Methods for the quantitative comparison of molecular estimates of clade age and the fossil record.

Clarke JA, Boyd CA.

Syst Biol. 2015 Jan;64(1):25-41. doi: 10.1093/sysbio/syu068. Epub 2014 Oct 3.

PMID:
25281846
9.

A comparison of confidence interval methods for the intraclass correlation coefficient in cluster randomized trials.

Ukoumunne OC.

Stat Med. 2002 Dec 30;21(24):3757-74. Erratum in: Stat Med. 2004 Sep 30;23(18):2935.

PMID:
12483765
10.

The Impact of the Tree Prior on Molecular Dating of Data Sets Containing a Mixture of Inter- and Intraspecies Sampling.

Ritchie AM, Lo N, Ho SYW.

Syst Biol. 2017 May 1;66(3):413-425. doi: 10.1093/sysbio/syw095.

PMID:
27798404
11.

Assignment of Calibration Information to Deeper Phylogenetic Nodes is More Effective in Obtaining Precise and Accurate Divergence Time Estimates.

Mello B, Schrago CG.

Evol Bioinform Online. 2014 May 7;10:79-85. doi: 10.4137/EBO.S13908. eCollection 2014.

12.

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree.

Matsen FA, Kodner RB, Armbrust EV.

BMC Bioinformatics. 2010 Oct 30;11:538. doi: 10.1186/1471-2105-11-538.

13.

Phylogenetic dating with confidence intervals using mean path lengths.

Britton T, Oxelman B, Vinnersten A, Bremer K.

Mol Phylogenet Evol. 2002 Jul;24(1):58-65.

PMID:
12128028
14.

The gene tree delusion.

Springer MS, Gatesy J.

Mol Phylogenet Evol. 2016 Jan;94(Pt A):1-33. doi: 10.1016/j.ympev.2015.07.018. Epub 2015 Jul 31.

PMID:
26238460
15.

Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci.

Zhu T, Dos Reis M, Yang Z.

Syst Biol. 2015 Mar;64(2):267-80. doi: 10.1093/sysbio/syu109. Epub 2014 Dec 11.

16.

Adjusted Maximum Likelihood Method in Small Area Estimation Problems.

Li H, Lahiri P.

J Multivar Anal. 2010 Apr 1;101(4):882.

17.

MAXIMUM-LIKELIHOOD ESTIMATION OF POPULATION DIVERGENCE TIMES AND POPULATION PHYLOGENY IN MODELS WITHOUT MUTATION.

Nielsen R, Mountain JL, Huelsenbeck JP, Slatkin M.

Evolution. 1998 Jun;52(3):669-677. doi: 10.1111/j.1558-5646.1998.tb03692.x.

PMID:
28565245
18.

The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages.

Soares AE, Schrago CG.

J Theor Biol. 2015 Jan 7;364:31-9. doi: 10.1016/j.jtbi.2014.09.004. Epub 2014 Sep 11.

PMID:
25218869
19.

Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages.

Molak M, Lorenzen ED, Shapiro B, Ho SY.

Mol Biol Evol. 2013 Feb;30(2):253-62. doi: 10.1093/molbev/mss232. Epub 2012 Oct 3.

PMID:
23024187
20.

Evidence of Statistical Inconsistency of Phylogenetic Methods in the Presence of Multiple Sequence Alignment Uncertainty.

Md Mukarram Hossain AS, Blackburne BP, Shah A, Whelan S.

Genome Biol Evol. 2015 Jul 1;7(8):2102-16. doi: 10.1093/gbe/evv127.

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