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Approximate Bayesian computation with deep learning supports a third archaic introgression in Asia and Oceania.

Mondal M, Bertranpetit J, Lao O.

Nat Commun. 2019 Jan 16;10(1):246. doi: 10.1038/s41467-018-08089-7.


Neanderthal and Denisova genetic affinities with contemporary humans: introgression versus common ancestral polymorphisms.

Lowery RK, Uribe G, Jimenez EB, Weiss MA, Herrera KJ, Regueiro M, Herrera RJ.

Gene. 2013 Nov 1;530(1):83-94. doi: 10.1016/j.gene.2013.06.005. Epub 2013 Jul 19.


Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture.

Browning SR, Browning BL, Zhou Y, Tucci S, Akey JM.

Cell. 2018 Mar 22;173(1):53-61.e9. doi: 10.1016/j.cell.2018.02.031. Epub 2018 Mar 15.


Multiple Deeply Divergent Denisovan Ancestries in Papuans.

Jacobs GS, Hudjashov G, Saag L, Kusuma P, Darusallam CC, Lawson DJ, Mondal M, Pagani L, Ricaut FX, Stoneking M, Metspalu M, Sudoyo H, Lansing JS, Cox MP.

Cell. 2019 Apr 10. pii: S0092-8674(19)30218-1. doi: 10.1016/j.cell.2019.02.035. [Epub ahead of print]


Evolutionary and Medical Consequences of Archaic Introgression into Modern Human Genomes.

Dolgova O, Lao O.

Genes (Basel). 2018 Jul 18;9(7). pii: E358. doi: 10.3390/genes9070358. Review.


Detecting archaic introgression using an unadmixed outgroup.

Skov L, Hui R, Shchur V, Hobolth A, Scally A, Schierup MH, Durbin R.

PLoS Genet. 2018 Sep 18;14(9):e1007641. doi: 10.1371/journal.pgen.1007641. eCollection 2018 Sep.


Analyses of Neanderthal introgression suggest that Levantine and southern Arabian populations have a shared population history.

Vyas DN, Mulligan CJ.

Am J Phys Anthropol. 2019 Mar 19. doi: 10.1002/ajpa.23818. [Epub ahead of print]


Neanderthal and Denisova tooth protein variants in present-day humans.

Zanolli C, Hourset M, Esclassan R, Mollereau C.

PLoS One. 2017 Sep 13;12(9):e0183802. doi: 10.1371/journal.pone.0183802. eCollection 2017.


The genome of the offspring of a Neanderthal mother and a Denisovan father.

Slon V, Mafessoni F, Vernot B, de Filippo C, Grote S, Viola B, Hajdinjak M, Peyrégne S, Nagel S, Brown S, Douka K, Higham T, Kozlikin MB, Shunkov MV, Derevianko AP, Kelso J, Meyer M, Prüfer K, Pääbo S.

Nature. 2018 Sep;561(7721):113-116. doi: 10.1038/s41586-018-0455-x. Epub 2018 Aug 22.


Neanderthal genomics suggests a pleistocene time frame for the first epidemiologic transition.

Houldcroft CJ, Underdown SJ.

Am J Phys Anthropol. 2016 Jul;160(3):379-88. doi: 10.1002/ajpa.22985. Epub 2016 Apr 10.


Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans.

Steinrücken M, Spence JP, Kamm JA, Wieczorek E, Song YS.

Mol Ecol. 2018 Oct;27(19):3873-3888. doi: 10.1111/mec.14565. Epub 2018 Apr 17.


Variation and Functional Impact of Neanderthal Ancestry in Western Asia.

Taskent RO, Alioglu ND, Fer E, Melike Donertas H, Somel M, Gokcumen O.

Genome Biol Evol. 2017 Dec 1;9(12):3516-3524. doi: 10.1093/gbe/evx216.


Archaic human ancestry in East Asia.

Skoglund P, Jakobsson M.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18301-6. doi: 10.1073/pnas.1108181108. Epub 2011 Oct 31.


Hominin interbreeding and the evolution of human variation.

Ko KH.

J Biol Res (Thessalon). 2016 Jul 16;23:17. doi: 10.1186/s40709-016-0054-7. eCollection 2016 Dec. Review.


A test for ancient selective sweeps and an application to candidate sites in modern humans.

Racimo F, Kuhlwilm M, Slatkin M.

Mol Biol Evol. 2014 Dec;31(12):3344-58. doi: 10.1093/molbev/msu255. Epub 2014 Aug 28.


Archaic human genomics.

Disotell TR.

Am J Phys Anthropol. 2012;149 Suppl 55:24-39. doi: 10.1002/ajpa.22159. Epub 2012 Nov 2. Review.


The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans.

Sankararaman S, Mallick S, Patterson N, Reich D.

Curr Biol. 2016 May 9;26(9):1241-7. doi: 10.1016/j.cub.2016.03.037. Epub 2016 Mar 28.


Signatures of Archaic Adaptive Introgression in Present-Day Human Populations.

Racimo F, Marnetto D, Huerta-Sánchez E.

Mol Biol Evol. 2017 Feb 1;34(2):296-317. doi: 10.1093/molbev/msw216.


Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies.

Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF.

Genome Res. 2016 Mar;26(3):291-300. doi: 10.1101/gr.196634.115. Epub 2016 Feb 17. Erratum in: Genome Res. 2016 May;26(5):717.1.


Ancestral Origins and Genetic History of Tibetan Highlanders.

Lu D, Lou H, Yuan K, Wang X, Wang Y, Zhang C, Lu Y, Yang X, Deng L, Zhou Y, Feng Q, Hu Y, Ding Q, Yang Y, Li S, Jin L, Guan Y, Su B, Kang L, Xu S.

Am J Hum Genet. 2016 Sep 1;99(3):580-594. doi: 10.1016/j.ajhg.2016.07.002. Epub 2016 Aug 25.

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