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Items: 1 to 20 of 99

1.

Construction and benchmarking of a multi-ethnic reference panel for the imputation of HLA class I and II alleles.

Degenhardt F, Wendorff M, Wittig M, Ellinghaus E, Datta LW, Schembri J, Ng SC, Rosati E, Hübenthal M, Ellinghaus D, Jung ES, Lieb W, Abedian S, Malekzadeh R, Cheon JH, Ellul P, Sood A, Midha V, Bk T, Wong SH, Schreiber S, Yamazaki K, Kubo M, Boucher G, Rioux J, Lenz TL, Brant SR, Franke A.

Hum Mol Genet. 2018 Dec 26. doi: 10.1093/hmg/ddy443. [Epub ahead of print]

PMID:
30590525
2.

HIBAG--HLA genotype imputation with attribute bagging.

Zheng X, Shen J, Cox C, Wakefield JC, Ehm MG, Nelson MR, Weir BS.

Pharmacogenomics J. 2014 Apr;14(2):192-200. doi: 10.1038/tpj.2013.18. Epub 2013 May 28.

3.

Performance of HLA allele prediction methods in African Americans for class II genes HLA-DRB1, -DQB1, and -DPB1.

Levin AM, Adrianto I, Datta I, Iannuzzi MC, Trudeau S, McKeigue P, Montgomery CG, Rybicki BA.

BMC Genet. 2014 Jun 16;15:72. doi: 10.1186/1471-2156-15-72.

4.

Imputing amino acid polymorphisms in human leukocyte antigens.

Jia X, Han B, Onengut-Gumuscu S, Chen WM, Concannon PJ, Rich SS, Raychaudhuri S, de Bakker PI.

PLoS One. 2013 Jun 6;8(6):e64683. doi: 10.1371/journal.pone.0064683. Print 2013.

5.

Significant variation between SNP-based HLA imputations in diverse populations: the last mile is the hardest.

Pappas DJ, Lizee A, Paunic V, Beutner KR, Motyer A, Vukcevic D, Leslie S, Biesiada J, Meller J, Taylor KD, Zheng X, Zhao LP, Gourraud PA, Hollenbach JA, Mack SJ, Maiers M.

Pharmacogenomics J. 2018 May 22;18(3):367-376. doi: 10.1038/tpj.2017.7. Epub 2017 Apr 25.

6.

HLA class I (A, B, C) and class II (DRB1, DQA1, DQB1, DPB1) alleles and haplotypes in the Han from southern China.

Trachtenberg E, Vinson M, Hayes E, Hsu YM, Houtchens K, Erlich H, Klitz W, Hsia Y, Hollenbach J.

Tissue Antigens. 2007 Dec;70(6):455-63. Epub 2007 Sep 27.

PMID:
17900288
7.

High-accuracy imputation for HLA class I and II genes based on high-resolution SNP data of population-specific references.

Khor SS, Yang W, Kawashima M, Kamitsuji S, Zheng X, Nishida N, Sawai H, Toyoda H, Miyagawa T, Honda M, Kamatani N, Tokunaga K.

Pharmacogenomics J. 2015 Dec;15(6):530-7. doi: 10.1038/tpj.2015.4. Epub 2015 Feb 24.

8.

Human leucocyte antigen class I and II imputation in a multiracial population.

Kuniholm MH, Xie X, Anastos K, Xue X, Reimers L, French AL, Gange SJ, Kassaye SG, Kovacs A, Wang T, Aouizerat BE, Strickler HD.

Int J Immunogenet. 2016 Dec;43(6):369-375. doi: 10.1111/iji.12292. Epub 2016 Oct 24.

9.

Predicting HLA alleles from high-resolution SNP data in three Southeast Asian populations.

Pillai NE, Okada Y, Saw WY, Ong RT, Wang X, Tantoso E, Xu W, Peterson TA, Bielawny T, Ali M, Tay KY, Poh WT, Tan LW, Koo SH, Lim WY, Soong R, Wenk M, Raychaudhuri S, Little P, Plummer FA, Lee EJ, Chia KS, Luo M, De Bakker PI, Teo YY.

Hum Mol Genet. 2014 Aug 15;23(16):4443-51. doi: 10.1093/hmg/ddu149. Epub 2014 Apr 3.

PMID:
24698974
10.

Comprehensive evaluation of imputation performance in African Americans.

Chanda P, Yuhki N, Li M, Bader JS, Hartz A, Boerwinkle E, Kao WH, Arking DE.

J Hum Genet. 2012 Jul;57(7):411-21. doi: 10.1038/jhg.2012.43. Epub 2012 May 31.

11.

Validation of statistical imputation of allele-level multilocus phased genotypes from ambiguous HLA assignments.

Madbouly A, Gragert L, Freeman J, Leahy N, Gourraud PA, Hollenbach JA, Kamoun M, Fernandez-Vina M, Maiers M.

Tissue Antigens. 2014 Sep;84(3):285-92. doi: 10.1111/tan.12390. Epub 2014 Jul 11.

PMID:
25040134
12.

Multi-population classical HLA type imputation.

Dilthey A, Leslie S, Moutsianas L, Shen J, Cox C, Nelson MR, McVean G.

PLoS Comput Biol. 2013;9(2):e1002877. doi: 10.1371/journal.pcbi.1002877. Epub 2013 Feb 14.

13.

HLA imputation in an admixed population: An assessment of the 1000 Genomes data as a training set.

Nunes K, Zheng X, Torres M, Moraes ME, Piovezan BZ, Pontes GN, Kimura L, Carnavalli JEP, Mingroni Netto RC, Meyer D.

Hum Immunol. 2016 Mar;77(3):307-312. doi: 10.1016/j.humimm.2015.11.004. Epub 2015 Nov 12.

14.

Construction and application of a Korean reference panel for imputing classical alleles and amino acids of human leukocyte antigen genes.

Kim K, Bang SY, Lee HS, Bae SC.

PLoS One. 2014 Nov 14;9(11):e112546. doi: 10.1371/journal.pone.0112546. eCollection 2014.

15.

Predicting HLA genotypes using unphased and flanking single-nucleotide polymorphisms in Han Chinese population.

Hsieh AR, Chang SW, Chen PL, Chu CC, Hsiao CL, Yang WS, Chang CC, Wu JY, Chen YT, Chang TC, Fann CS.

BMC Genomics. 2014 Jan 29;15:81. doi: 10.1186/1471-2164-15-81.

16.

Imputation-Based HLA Typing with SNPs in GWAS Studies.

Zheng X.

Methods Mol Biol. 2018;1802:163-176. doi: 10.1007/978-1-4939-8546-3_11.

PMID:
29858808
17.

[Study of polymorphisms of HLA class Ⅰ (-A, -B, -C) and class Ⅱ (DRB1, DQA1, DQB1, DPA1, DPB1) genes among ethnic Hans from Southern China].

Jin S, Zou H, Zhen J, Wang D, He L, Deng Z.

Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2017 Feb 10;34(1):110-114. doi: 10.3760/cma.j.issn.1003-9406.2017.01.026. Chinese.

PMID:
28186608
18.

High-throughput next-generation sequencing to genotype six classical HLA loci from 96 donors in a single MiSeq run.

Ehrenberg PK, Geretz A, Sindhu RK, Vayntrub T, Fernández Viña MA, Apps R, Michael NL, Thomas R.

HLA. 2017 Nov;90(5):284-291. doi: 10.1111/tan.13133. Epub 2017 Sep 14.

PMID:
28842944
19.

HLA class II diversity in HIV-1 uninfected individuals from the placebo arm of the RV144 Thai vaccine efficacy trial.

Baldwin KM, Ehrenberg PK, Geretz A, Prentice HA, Nitayaphan S, Rerks-Ngarm S, Kaewkungwal J, Pitisuttithum P, O'Connell RJ, Kim JH, Thomas R.

Tissue Antigens. 2015 Feb;85(2):117-26. doi: 10.1111/tan.12507.

20.

HLA-DRB1, -DRB3, -DRB4 and -DRB5 genotyping at a super-high resolution level by long range PCR and high-throughput sequencing.

Ozaki Y, Suzuki S, Shigenari A, Okudaira Y, Kikkawa E, Oka A, Ota M, Mitsunaga S, Kulski JK, Inoko H, Shiina T.

Tissue Antigens. 2014 Jan;83(1):10-6. doi: 10.1111/tan.12258. Epub 2013 Nov 30.

PMID:
24355003

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