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Items: 1 to 20 of 107

1.

Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.

Egli A, Blanc DS, Greub G, Keller PM, Lazarevic V, Lebrand A, Leib S, Neher RA, Perreten V, Ramette A, Schrenzel J, Stephan R, Wagner K, Wuethrich D, Xenarios I.

Swiss Med Wkly. 2018 Dec 15;148:w14693. doi: 10.4414/smw.2018.14693. eCollection 2018 Dec 3.

2.

Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology.

Salipante SJ, SenGupta DJ, Cummings LA, Land TA, Hoogestraat DR, Cookson BT.

J Clin Microbiol. 2015 Apr;53(4):1072-9. doi: 10.1128/JCM.03385-14. Epub 2015 Jan 28.

3.

Clonal or not clonal? Investigating hospital outbreaks of KPC-producing Klebsiella pneumoniae with whole-genome sequencing.

Ruppé E, Olearo F, Pires D, Baud D, Renzi G, Cherkaoui A, Goldenberger D, Huttner A, François P, Harbarth S, Schrenzel J.

Clin Microbiol Infect. 2017 Jul;23(7):470-475. doi: 10.1016/j.cmi.2017.01.015. Epub 2017 Jan 29.

4.

Overview of molecular typing methods for outbreak detection and epidemiological surveillance.

Sabat AJ, Budimir A, Nashev D, Sá-Leão R, van Dijl Jm, Laurent F, Grundmann H, Friedrich AW; ESCMID Study Group of Epidemiological Markers (ESGEM).

Euro Surveill. 2013 Jan 24;18(4):20380. Review.

5.

PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.

Nadon C, Van Walle I, Gerner-Smidt P, Campos J, Chinen I, Concepcion-Acevedo J, Gilpin B, Smith AM, Man Kam K, Perez E, Trees E, Kubota K, Takkinen J, Nielsen EM, Carleton H; FWD-NEXT Expert Panel.

Euro Surveill. 2017 Jun 8;22(23). pii: 30544. doi: 10.2807/1560-7917.ES.2017.22.23.30544. Review.

6.

Bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.

Marschall J.

Swiss Med Wkly. 2019 Jan 4;149:w14707. doi: 10.4414/smw.2019.14707. eCollection 2019 Jan 1. No abstract available.

7.

Real-Time Whole-Genome Sequencing for Surveillance of Listeria monocytogenes, France.

Moura A, Tourdjman M, Leclercq A, Hamelin E, Laurent E, Fredriksen N, Van Cauteren D, Bracq-Dieye H, Thouvenot P, Vales G, Tessaud-Rita N, Maury MM, Alexandru A, Criscuolo A, Quevillon E, Donguy MP, Enouf V, de Valk H, Brisse S, Lecuit M.

Emerg Infect Dis. 2017 Sep;23(9):1462-1470. doi: 10.3201/eid2309.170336. Epub 2017 Sep 17.

8.

Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections.

Llarena AK, Taboada E, Rossi M.

J Clin Microbiol. 2017 May;55(5):1269-1275. doi: 10.1128/JCM.00017-17. Epub 2017 Mar 1. Review.

9.

Whole genome sequencing: a new paradigm in the surveillance and control of human tuberculosis.

Hasnain SE, O'Toole RF, Grover S, Ehtesham NZ.

Tuberculosis (Edinb). 2015 Mar;95(2):91-4. doi: 10.1016/j.tube.2014.12.007. Epub 2014 Dec 31. Review.

PMID:
25586521
10.

Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.

Jackson BR, Tarr C, Strain E, Jackson KA, Conrad A, Carleton H, Katz LS, Stroika S, Gould LH, Mody RK, Silk BJ, Beal J, Chen Y, Timme R, Doyle M, Fields A, Wise M, Tillman G, Defibaugh-Chavez S, Kucerova Z, Sabol A, Roache K, Trees E, Simmons M, Wasilenko J, Kubota K, Pouseele H, Klimke W, Besser J, Brown E, Allard M, Gerner-Smidt P.

Clin Infect Dis. 2016 Aug 1;63(3):380-6. doi: 10.1093/cid/ciw242. Epub 2016 Apr 18.

11.

Comparison of Whole-Genome Sequencing Methods for Analysis of Three Methicillin-Resistant Staphylococcus aureus Outbreaks.

Cunningham SA, Chia N, Jeraldo PR, Quest DJ, Johnson JA, Boxrud DJ, Taylor AJ, Chen J, Jenkins GD, Drucker TM, Nelson H, Patel R.

J Clin Microbiol. 2017 Jun;55(6):1946-1953. doi: 10.1128/JCM.00029-17. Epub 2017 Apr 12.

12.

Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene-based approaches.

Schürch AC, Arredondo-Alonso S, Willems RJL, Goering RV.

Clin Microbiol Infect. 2018 Apr;24(4):350-354. doi: 10.1016/j.cmi.2017.12.016. Epub 2018 Jan 5. Review.

13.

Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology.

Reuter S, Ellington MJ, Cartwright EJ, Köser CU, Török ME, Gouliouris T, Harris SR, Brown NM, Holden MT, Quail M, Parkhill J, Smith GP, Bentley SD, Peacock SJ.

JAMA Intern Med. 2013 Aug 12;173(15):1397-404. doi: 10.1001/jamainternmed.2013.7734.

14.

Genomic sequencing of Neisseria gonorrhoeae to respond to the urgent threat of antimicrobial-resistant gonorrhea.

Abrams AJ, Trees DL.

Pathog Dis. 2017 Jun 1;75(4). doi: 10.1093/femspd/ftx041. Review.

PMID:
28387837
15.

Practical issues in implementing whole-genome-sequencing in routine diagnostic microbiology.

Rossen JWA, Friedrich AW, Moran-Gilad J; ESCMID Study Group for Genomic and Molecular Diagnostics (ESGMD).

Clin Microbiol Infect. 2018 Apr;24(4):355-360. doi: 10.1016/j.cmi.2017.11.001. Epub 2017 Nov 5. Review.

16.

Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance.

Holmes A, Allison L, Ward M, Dallman TJ, Clark R, Fawkes A, Murphy L, Hanson M.

J Clin Microbiol. 2015 Nov;53(11):3565-73. doi: 10.1128/JCM.01066-15. Epub 2015 Sep 9.

17.

Tracking a tuberculosis outbreak over 21 years: strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing.

Stucki D, Ballif M, Bodmer T, Coscolla M, Maurer AM, Droz S, Butz C, Borrell S, Längle C, Feldmann J, Furrer H, Mordasini C, Helbling P, Rieder HL, Egger M, Gagneux S, Fenner L.

J Infect Dis. 2015 Apr 15;211(8):1306-16. doi: 10.1093/infdis/jiu601. Epub 2014 Oct 30.

18.

The Evolution of Strain Typing in the Mycobacterium tuberculosis Complex.

Merker M, Kohl TA, Niemann S, Supply P.

Adv Exp Med Biol. 2017;1019:43-78. doi: 10.1007/978-3-319-64371-7_3. Review.

PMID:
29116629
19.

Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review.

Tagini F, Greub G.

Eur J Clin Microbiol Infect Dis. 2017 Nov;36(11):2007-2020. doi: 10.1007/s10096-017-3024-6. Epub 2017 Jun 21. Review.

20.

Tracking of Listeria monocytogenes in meat establishment using Whole Genome Sequencing as a food safety management tool: A proof of concept.

Nastasijevic I, Milanov D, Velebit B, Djordjevic V, Swift C, Painset A, Lakicevic B.

Int J Food Microbiol. 2017 Sep 18;257:157-164. doi: 10.1016/j.ijfoodmicro.2017.06.015. Epub 2017 Jun 20.

PMID:
28666130

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