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Items: 1 to 20 of 89

1.

Conducting metagenomic studies in microbiology and clinical research.

Martin TC, Visconti A, Spector TD, Falchi M.

Appl Microbiol Biotechnol. 2018 Oct;102(20):8629-8646. doi: 10.1007/s00253-018-9209-9. Epub 2018 Aug 4. Review.

2.

Biofilm-growing bacteria involved in the corrosion of concrete wastewater pipes: protocols for comparative metagenomic analyses.

Gomez-Alvarez V.

Methods Mol Biol. 2014;1147:323-40. doi: 10.1007/978-1-4939-0467-9_23.

PMID:
24664844
3.

Challenges and opportunities of airborne metagenomics.

Behzad H, Gojobori T, Mineta K.

Genome Biol Evol. 2015 May 6;7(5):1216-26. doi: 10.1093/gbe/evv064. Review.

4.

A genomic day in the life of a clinical microbiology laboratory.

Long SW, Williams D, Valson C, Cantu CC, Cernoch P, Musser JM, Olsen RJ.

J Clin Microbiol. 2013 Apr;51(4):1272-7. doi: 10.1128/JCM.03237-12. Epub 2013 Jan 23.

5.

High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats.

Zhou J, He Z, Yang Y, Deng Y, Tringe SG, Alvarez-Cohen L.

MBio. 2015 Jan 27;6(1). pii: e02288-14. doi: 10.1128/mBio.02288-14. Review.

6.

FCMM: A comparative metagenomic approach for functional characterization of multiple metagenome samples.

Lee J, Lee HT, Hong WY, Jang E, Kim J.

J Microbiol Methods. 2015 Aug;115:121-8. doi: 10.1016/j.mimet.2015.05.023. Epub 2015 May 29.

PMID:
26027543
7.

Rapid whole-genome sequencing of bacterial pathogens in the clinical microbiology laboratory--pipe dream or reality?

Török ME, Peacock SJ.

J Antimicrob Chemother. 2012 Oct;67(10):2307-8. doi: 10.1093/jac/dks247. Epub 2012 Jun 22. Review.

PMID:
22729921
8.

Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing.

Schmidt K, Mwaigwisya S, Crossman LC, Doumith M, Munroe D, Pires C, Khan AM, Woodford N, Saunders NJ, Wain J, O'Grady J, Livermore DM.

J Antimicrob Chemother. 2017 Jan;72(1):104-114. Epub 2016 Sep 25.

PMID:
27667325
9.

Metagenomic approaches to identifying infectious agents.

Höper D, Mettenleiter TC, Beer M.

Rev Sci Tech. 2016 Apr;35(1):83-93. doi: 10.20506/rst.35.1.2419. Review.

PMID:
27217170
10.

Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections.

Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, Hoffman NG.

PLoS One. 2013 May 29;8(5):e65226. doi: 10.1371/journal.pone.0065226. Print 2013.

11.

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies.

Brooks JP, Edwards DJ, Harwich MD Jr, Rivera MC, Fettweis JM, Serrano MG, Reris RA, Sheth NU, Huang B, Girerd P; Vaginal Microbiome Consortium, Strauss JF 3rd, Jefferson KK, Buck GA.

BMC Microbiol. 2015 Mar 21;15:66. doi: 10.1186/s12866-015-0351-6.

12.

Metagenomic analysis of bacterial infections by means of high-throughput DNA sequencing.

Nakamura S, Nakaya T, Iida T.

Exp Biol Med (Maywood). 2011 Aug;236(8):968-71. doi: 10.1258/ebm.2011.010378. Epub 2011 Jul 7. Review.

PMID:
21737580
13.

Can molecular DNA-based techniques unravel the truth about diabetic foot infections?

Malone M, Gosbell IB, Dickson HG, Vickery K, Espedido BA, Jensen SO.

Diabetes Metab Res Rev. 2017 Jan;33(1). doi: 10.1002/dmrr.2834. Epub 2016 Jul 5. Review.

PMID:
27291330
14.

Progress in cultivation-independent phyllosphere microbiology.

Müller T, Ruppel S.

FEMS Microbiol Ecol. 2014 Jan;87(1):2-17. doi: 10.1111/1574-6941.12198. Epub 2013 Sep 30. Review.

15.

Computational challenges of sequence classification in microbiomic data.

Ribeca P, Valiente G.

Brief Bioinform. 2011 Nov;12(6):614-25. doi: 10.1093/bib/bbr019. Epub 2011 Apr 18.

PMID:
21504986
16.

Messages from the first International Conference on Clinical Metagenomics (ICCMg).

Ruppé E, Greub G, Schrenzel J.

Microbes Infect. 2017 Apr - May;19(4-5):223-228. doi: 10.1016/j.micinf.2017.01.005. Epub 2017 Feb 1.

PMID:
28161601
17.

DNA extraction for streamlined metagenomics of diverse environmental samples.

Marotz C, Amir A, Humphrey G, Gaffney J, Gogul G, Knight R.

Biotechniques. 2017 Jun 1;62(6):290-293. doi: 10.2144/000114559.

18.

The first Taxus rhizosphere microbiome revealed by shotgun metagenomic sequencing.

Hao DC, Zhang CR, Xiao PG.

J Basic Microbiol. 2018 Jun;58(6):501-512. doi: 10.1002/jobm.201700663. Epub 2018 Apr 20.

PMID:
29676472
19.

Marine sediment bacteria harbor antibiotic resistance genes highly similar to those found in human pathogens.

Yang J, Wang C, Shu C, Liu L, Geng J, Hu S, Feng J.

Microb Ecol. 2013 May;65(4):975-81. doi: 10.1007/s00248-013-0187-2. Epub 2013 Feb 1.

PMID:
23370726
20.

Functional metagenomics: a high throughput screening method to decipher microbiota-driven NF-κB modulation in the human gut.

Lakhdari O, Cultrone A, Tap J, Gloux K, Bernard F, Ehrlich SD, Lefèvre F, Doré J, Blottière HM.

PLoS One. 2010 Sep 30;5(9). pii: e13092. doi: 10.1371/journal.pone.0013092. Erratum in: PLoS One. 2010;5(10). doi: 10.1371/annotation/4ea12169-7c97-497c-a45f-52203543065f. PLoS One. 2010;5(10). doi: 10.1371/annotation/9f1b7f00-bcc0-4442-9775-491ebdafc7bc.

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