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Rapid gastrointestinal loss of Clostridial Clusters IV and XIVa in the ICU associates with an expansion of gut pathogens.

Livanos AE, Snider EJ, Whittier S, Chong DH, Wang TC, Abrams JA, Freedberg DE.

PLoS One. 2018 Aug 1;13(8):e0200322. doi: 10.1371/journal.pone.0200322. eCollection 2018.


Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjects.

Buelow E, Bello González TDJ, Fuentes S, de Steenhuijsen Piters WAA, Lahti L, Bayjanov JR, Majoor EAM, Braat JC, van Mourik MSM, Oostdijk EAN, Willems RJL, Bonten MJM, van Passel MWJ, Smidt H, van Schaik W.

Microbiome. 2017 Aug 14;5(1):88. doi: 10.1186/s40168-017-0309-z.


Cooperating Commensals Restore Colonization Resistance to Vancomycin-Resistant Enterococcus faecium.

Caballero S, Kim S, Carter RA, Leiner IM, Sušac B, Miller L, Kim GJ, Ling L, Pamer EG.

Cell Host Microbe. 2017 May 10;21(5):592-602.e4. doi: 10.1016/j.chom.2017.04.002.


Pathogen colonization of the gastrointestinal microbiome at intensive care unit admission and risk for subsequent death or infection.

Freedberg DE, Zhou MJ, Cohen ME, Annavajhala MK, Khan S, Moscoso DI, Brooks C, Whittier S, Chong DH, Uhlemann AC, Abrams JA.

Intensive Care Med. 2018 Aug;44(8):1203-1211. doi: 10.1007/s00134-018-5268-8. Epub 2018 Jun 23.


Membership and behavior of ultra-low-diversity pathogen communities present in the gut of humans during prolonged critical illness.

Zaborin A, Smith D, Garfield K, Quensen J, Shakhsheer B, Kade M, Tirrell M, Tiedje J, Gilbert JA, Zaborina O, Alverdy JC.

MBio. 2014 Sep 23;5(5):e01361-14. doi: 10.1128/mBio.01361-14.


Changes in human fecal microbiota due to chemotherapy analyzed by TaqMan-PCR, 454 sequencing and PCR-DGGE fingerprinting.

Zwielehner J, Lassl C, Hippe B, Pointner A, Switzeny OJ, Remely M, Kitzweger E, Ruckser R, Haslberger AG.

PLoS One. 2011;6(12):e28654. doi: 10.1371/journal.pone.0028654. Epub 2011 Dec 14.


Risk factors for enterococcal infection and colonization by vancomycin-resistant enterococci in critically ill patients.

Papadimitriou-Olivgeris M, Drougka E, Fligou F, Kolonitsiou F, Liakopoulos A, Dodou V, Anastassiou ED, Petinaki E, Marangos M, Filos KS, Spiliopoulou I.

Infection. 2014 Dec;42(6):1013-22. doi: 10.1007/s15010-014-0678-1. Epub 2014 Aug 21.


Distinct but Spatially Overlapping Intestinal Niches for Vancomycin-Resistant Enterococcus faecium and Carbapenem-Resistant Klebsiella pneumoniae.

Caballero S, Carter R, Ke X, Sušac B, Leiner IM, Kim GJ, Miller L, Ling L, Manova K, Pamer EG.

PLoS Pathog. 2015 Sep 3;11(9):e1005132. doi: 10.1371/journal.ppat.1005132. eCollection 2015 Sep.


Dysbiosis in the Gut Microbiota of Patients with Multiple Sclerosis, with a Striking Depletion of Species Belonging to Clostridia XIVa and IV Clusters.

Miyake S, Kim S, Suda W, Oshima K, Nakamura M, Matsuoka T, Chihara N, Tomita A, Sato W, Kim SW, Morita H, Hattori M, Yamamura T.

PLoS One. 2015 Sep 14;10(9):e0137429. doi: 10.1371/journal.pone.0137429. eCollection 2015.


Clostridia in premature neonates' gut: incidence, antibiotic susceptibility, and perinatal determinants influencing colonization.

Ferraris L, Butel MJ, Campeotto F, Vodovar M, Rozé JC, Aires J.

PLoS One. 2012;7(1):e30594. doi: 10.1371/journal.pone.0030594. Epub 2012 Jan 26.


Protectors of the Neonatal Gut: Clostridia Send Pathogens Packing.

Behnsen J.

Cell Host Microbe. 2017 Jun 14;21(6):651-652. doi: 10.1016/j.chom.2017.06.002.


Identification of subclinical transmission of vancomycin-resistant enterococcus within an intensive care unit in Taiwan.

Lee SC, Lee CW, Shih TC, See LC, Chu CM, Liu YC.

J Microbiol Immunol Infect. 2016 Oct;49(5):749-759. doi: 10.1016/j.jmii.2015.11.002. Epub 2016 Jan 18.


A Walnut-Enriched Diet Affects Gut Microbiome in Healthy Caucasian Subjects: A Randomized, Controlled Trial.

Bamberger C, Rossmeier A, Lechner K, Wu L, Waldmann E, Fischer S, Stark RG, Altenhofer J, Henze K, Parhofer KG.

Nutrients. 2018 Feb 22;10(2). pii: E244. doi: 10.3390/nu10020244.


The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencing.

Drell T, Lutsar I, Stšepetova J, Parm U, Metsvaht T, Ilmoja ML, Simm J, Sepp E.

Gut Microbes. 2014 May-Jun;5(3):304-12. doi: 10.4161/gmic.28849.


The incidence of and clinical variables associated with vancomycin-resistant enterococcal colonization in mechanically ventilated patients.

Bhorade SM, Christenson J, Pohlman AS, Arnow PM, Hall JB.

Chest. 1999 Apr;115(4):1085-91.


Dysbiosis Across Multiple Body Sites in Critically Ill Adult Surgical Patients.

Yeh A, Rogers MB, Firek B, Neal MD, Zuckerbraun BS, Morowitz MJ.

Shock. 2016 Dec;46(6):649-654.


Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients.

Gorrie CL, Mirceta M, Wick RR, Edwards DJ, Thomson NR, Strugnell RA, Pratt NF, Garlick JS, Watson KM, Pilcher DV, McGloughlin SA, Spelman DW, Jenney AWJ, Holt KE.

Clin Infect Dis. 2017 Jul 15;65(2):208-215. doi: 10.1093/cid/cix270.


Potential use of probiotic and commensal bacteria as non-antibiotic strategies against vancomycin-resistant enterococci.

Crouzet L, Rigottier-Gois L, Serror P.

FEMS Microbiol Lett. 2015 Apr;362(8):fnv012. doi: 10.1093/femsle/fnv012. Epub 2015 Feb 8. Review.


Patient-level analysis of incident vancomycin-resistant enterococci colonization and antibiotic days of therapy.

McKINNELL JA, Kunz DF, Moser SA, Vangala S, Tseng CH, Shapiro M, Miller LG.

Epidemiol Infect. 2016 Jun;144(8):1748-55. doi: 10.1017/S0950268815003118.

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