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Items: 1 to 20 of 102

1.

The maize W22 genome provides a foundation for functional genomics and transposon biology.

Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Köllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL 2nd, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W, Brutnell TP.

Nat Genet. 2018 Sep;50(9):1282-1288. doi: 10.1038/s41588-018-0158-0. Epub 2018 Jul 30.

PMID:
30061736
2.

Identification of an active new mutator transposable element in maize.

Tan BC, Chen Z, Shen Y, Zhang Y, Lai J, Sun SS.

G3 (Bethesda). 2011 Sep;1(4):293-302. doi: 10.1534/g3.111.000398. Epub 2011 Sep 1.

3.

Genome-wide distribution of transposed Dissociation elements in maize.

Vollbrecht E, Duvick J, Schares JP, Ahern KR, Deewatthanawong P, Xu L, Conrad LJ, Kikuchi K, Kubinec TA, Hall BD, Weeks R, Unger-Wallace E, Muszynski M, Brendel VP, Brutnell TP.

Plant Cell. 2010 Jun;22(6):1667-85. doi: 10.1105/tpc.109.073452. Epub 2010 Jun 25.

4.

Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing.

Solares EA, Chakraborty M, Miller DE, Kalsow S, Hall K, Perera AG, Emerson JJ, Hawley RS.

G3 (Bethesda). 2018 Oct 3;8(10):3143-3154. doi: 10.1534/g3.118.200162.

5.

Mu-seq: sequence-based mapping and identification of transposon induced mutations.

McCarty DR, Latshaw S, Wu S, Suzuki M, Hunter CT, Avigne WT, Koch KE.

PLoS One. 2013 Oct 23;8(10):e77172. doi: 10.1371/journal.pone.0077172. eCollection 2013.

6.

Molecular analysis of high-copy insertion sites in maize.

Settles AM, Latshaw S, McCarty DR.

Nucleic Acids Res. 2004 Apr 1;32(6):e54.

7.

The complete Ac/Ds transposon family of maize.

Du C, Hoffman A, He L, Caronna J, Dooner HK.

BMC Genomics. 2011 Dec 1;12:588. doi: 10.1186/1471-2164-12-588.

8.

Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype.

Mascher M, Gerlach N, Gahrtz M, Bucher M, Scholz U, Dresselhaus T.

PLoS One. 2014 May 7;9(5):e96782. doi: 10.1371/journal.pone.0096782. eCollection 2014.

9.

Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome.

Liu S, Yeh CT, Ji T, Ying K, Wu H, Tang HM, Fu Y, Nettleton D, Schnable PS.

PLoS Genet. 2009 Nov;5(11):e1000733. doi: 10.1371/journal.pgen.1000733. Epub 2009 Nov 20.

10.

Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing.

Hansey CN, Vaillancourt B, Sekhon RS, de Leon N, Kaeppler SM, Buell CR.

PLoS One. 2012;7(3):e33071. doi: 10.1371/journal.pone.0033071. Epub 2012 Mar 16.

11.

Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads.

Dong J, Feng Y, Kumar D, Zhang W, Zhu T, Luo MC, Messing J.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):7949-56. doi: 10.1073/pnas.1608775113. Epub 2016 Jun 27.

12.

TCUP: A Novel hAT Transposon Active in Maize Tissue Culture.

Smith AM, Hansey CN, Kaeppler SM.

Front Plant Sci. 2012 Jan 26;3:6. doi: 10.3389/fpls.2012.00006. eCollection 2012.

13.

Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

Darracq A, Vitte C, Nicolas S, Duarte J, Pichon JP, Mary-Huard T, Chevalier C, Bérard A, Le Paslier MC, Rogowsky P, Charcosset A, Joets J.

BMC Genomics. 2018 Feb 5;19(1):119. doi: 10.1186/s12864-018-4490-7.

14.

Contrasting insect attraction and herbivore-induced plant volatile production in maize.

Block AK, Hunter CT, Rering C, Christensen SA, Meagher RL.

Planta. 2018 Jul;248(1):105-116. doi: 10.1007/s00425-018-2886-x. Epub 2018 Apr 3.

PMID:
29616394
15.

The B73 maize genome: complexity, diversity, and dynamics.

Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK.

Science. 2009 Nov 20;326(5956):1112-5. doi: 10.1126/science.1178534. Erratum in: Science. 2012 Aug 31;337(6098):1040.

16.

De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies.

Mousavi M, Tong C, Liu F, Tao S, Wu J, Li H, Shi J.

BMC Genomics. 2016 Aug 18;17:656. doi: 10.1186/s12864-016-3003-9.

17.

Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives.

Wang C, Shi X, Liu L, Li H, Ammiraju JS, Kudrna DA, Xiong W, Wang H, Dai Z, Zheng Y, Lai J, Jin W, Messing J, Bennetzen JL, Wing RA, Luo M.

Genetics. 2013 Nov;195(3):723-37. doi: 10.1534/genetics.113.157115. Epub 2013 Sep 13. Erratum in: Genetics. 2014 Jan;196(1):365.

18.

RNA-Seq Based Analysis of Population Structure within the Maize Inbred B73.

Liang Z, Schnable JC.

PLoS One. 2016 Jun 27;11(6):e0157942. doi: 10.1371/journal.pone.0157942. eCollection 2016.

19.

DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity.

Eichten SR, Stuart T, Srivastava A, Lister R, Borevitz JO.

Genome Res. 2016 Nov;26(11):1520-1531. Epub 2016 Sep 9.

20.

Targeted Sequencing Reveals Large-Scale Sequence Polymorphism in Maize Candidate Genes for Biomass Production and Composition.

Muraya MM, Schmutzer T, Ulpinnis C, Scholz U, Altmann T.

PLoS One. 2015 Jul 7;10(7):e0132120. doi: 10.1371/journal.pone.0132120. eCollection 2015.

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