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Items: 1 to 20 of 101

1.

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes.

Sun S, Zhou Y, Chen J, Shi J, Zhao H, Zhao H, Song W, Zhang M, Cui Y, Dong X, Liu H, Ma X, Jiao Y, Wang B, Wei X, Stein JC, Glaubitz JC, Lu F, Yu G, Liang C, Fengler K, Li B, Rafalski A, Schnable PS, Ware DH, Buckler ES, Lai J.

Nat Genet. 2018 Sep;50(9):1289-1295. doi: 10.1038/s41588-018-0182-0. Epub 2018 Jul 30.

PMID:
30061735
2.

Transcriptomics and Alternative Splicing Analyses Reveal Large Differences between Maize Lines B73 and Mo17 in Response to Aphid Rhopalosiphum padi Infestation.

Song J, Liu H, Zhuang H, Zhao C, Xu Y, Wu S, Qi J, Li J, Hettenhausen C, Wu J.

Front Plant Sci. 2017 Oct 10;8:1738. doi: 10.3389/fpls.2017.01738. eCollection 2017.

3.

Heterosis in early maize ear inflorescence development: a genome-wide transcription analysis for two maize inbred lines and their hybrid.

Ding H, Qin C, Luo X, Li L, Chen Z, Liu H, Gao J, Lin H, Shen Y, Zhao M, Lübberstedt T, Zhang Z, Pan G.

Int J Mol Sci. 2014 Aug 11;15(8):13892-915. doi: 10.3390/ijms150813892.

4.

Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing.

Hansey CN, Vaillancourt B, Sekhon RS, de Leon N, Kaeppler SM, Buell CR.

PLoS One. 2012;7(3):e33071. doi: 10.1371/journal.pone.0033071. Epub 2012 Mar 16.

5.

Addition of individual chromosomes of maize inbreds B73 and Mo17 to oat cultivars Starter and Sun II: maize chromosome retention, transmission, and plant phenotype.

Rines HW, Phillips RL, Kynast RG, Okagaki RJ, Galatowitsch MW, Huettl PA, Stec AO, Jacobs MS, Suresh J, Porter HL, Walch MD, Cabral CB.

Theor Appl Genet. 2009 Nov;119(7):1255-64. doi: 10.1007/s00122-009-1130-2. Epub 2009 Aug 26.

PMID:
19707741
6.

Nonsyntenic Genes Drive Tissue-Specific Dynamics of Differential, Nonadditive, and Allelic Expression Patterns in Maize Hybrids.

Baldauf JA, Marcon C, Paschold A, Hochholdinger F.

Plant Physiol. 2016 Jun;171(2):1144-55. doi: 10.1104/pp.16.00262. Epub 2016 Apr 19.

7.

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content.

Springer NM, Ying K, Fu Y, Ji T, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, Iniguez AL, Barbazuk WB, Jeddeloh JA, Nettleton D, Schnable PS.

PLoS Genet. 2009 Nov;5(11):e1000734. doi: 10.1371/journal.pgen.1000734. Epub 2009 Nov 20.

8.

Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

Darracq A, Vitte C, Nicolas S, Duarte J, Pichon JP, Mary-Huard T, Chevalier C, Bérard A, Le Paslier MC, Rogowsky P, Charcosset A, Joets J.

BMC Genomics. 2018 Feb 5;19(1):119. doi: 10.1186/s12864-018-4490-7.

9.

Circular RNAs exhibit extensive intraspecific variation in maize.

Luo Z, Han L, Qian J, Li L.

Planta. 2019 Mar 23. doi: 10.1007/s00425-019-03145-y. [Epub ahead of print]

PMID:
30904942
10.

Contributions of Zea mays subspecies mexicana haplotypes to modern maize.

Yang N, Xu XW, Wang RR, Peng WL, Cai L, Song JM, Li W, Luo X, Niu L, Wang Y, Jin M, Chen L, Luo J, Deng M, Wang L, Pan Q, Liu F, Jackson D, Yang X, Chen LL, Yan J.

Nat Commun. 2017 Nov 30;8(1):1874. doi: 10.1038/s41467-017-02063-5.

11.

Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype.

Mascher M, Gerlach N, Gahrtz M, Bucher M, Scholz U, Dresselhaus T.

PLoS One. 2014 May 7;9(5):e96782. doi: 10.1371/journal.pone.0096782. eCollection 2014.

12.

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome.

Ganal MW, Durstewitz G, Polley A, Bérard A, Buckler ES, Charcosset A, Clarke JD, Graner EM, Hansen M, Joets J, Le Paslier MC, McMullen MD, Montalent P, Rose M, Schön CC, Sun Q, Walter H, Martin OC, Falque M.

PLoS One. 2011;6(12):e28334. doi: 10.1371/journal.pone.0028334. Epub 2011 Dec 8.

13.

Natural variation for alleles under epigenetic control by the maize chromomethylase zmet2.

Makarevitch I, Stupar RM, Iniguez AL, Haun WJ, Barbazuk WB, Kaeppler SM, Springer NM.

Genetics. 2007 Oct;177(2):749-60. Epub 2007 Jul 29.

14.

Allelic genome structural variations in maize detected by array comparative genome hybridization.

Beló A, Beatty MK, Hondred D, Fengler KA, Li B, Rafalski A.

Theor Appl Genet. 2010 Jan;120(2):355-67. doi: 10.1007/s00122-009-1128-9. Epub 2009 Aug 19.

PMID:
19756477
15.

Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes.

Zhou P, Silverstein KA, Ramaraj T, Guhlin J, Denny R, Liu J, Farmer AD, Steele KP, Stupar RM, Miller JR, Tiffin P, Mudge J, Young ND.

BMC Genomics. 2017 Mar 27;18(1):261. doi: 10.1186/s12864-017-3654-1.

16.

Variation characteristics of the nitrate reductase gene of key inbred maize lines and derived lines in China.

Zhang JJ, Zhang XQ, Liu YH, Liu HM, Wang YB, Tian ML, Huang YB.

Genet Mol Res. 2010 Sep 14;9(3):1824-35. doi: 10.4238/vol9-3gmr931.

17.

Identification and characterization of a repertoire of genes differentially expressed in developing top ear shoots between a superior hybrid and its parental inbreds in Zea mays L.

Qin J, Scheuring CF, Wei G, Zhi H, Zhang M, Huang JJ, Zhou X, Galbraith DW, Zhang HB.

Mol Genet Genomics. 2013 Dec;288(12):691-705. doi: 10.1007/s00438-013-0781-5. Epub 2013 Oct 22.

PMID:
24146224
18.

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.

Kurtz S, Narechania A, Stein JC, Ware D.

BMC Genomics. 2008 Oct 31;9:517. doi: 10.1186/1471-2164-9-517.

19.
20.

Stability of Single-Parent Gene Expression Complementation in Maize Hybrids upon Water Deficit Stress.

Marcon C, Paschold A, Malik WA, Lithio A, Baldauf JA, Altrogge L, Opitz N, Lanz C, Schoof H, Nettleton D, Piepho HP, Hochholdinger F.

Plant Physiol. 2017 Feb;173(2):1247-1257. doi: 10.1104/pp.16.01045. Epub 2016 Dec 20.

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